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PDBsum entry 8j4f
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Pore analysis for: 8j4f calculated with  MOLE 2.0
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PDB id
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8j4f
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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21 pores,
coloured by radius |
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26 pores,
coloured by radius
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26 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.15 |
2.42 |
28.1 |
-1.47 |
-0.32 |
16.5 |
80 |
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4 |
1 |
3 |
4 |
1 |
4 |
0 |
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PCW 2012 A PCW 2019 A
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2 |
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1.23 |
1.23 |
28.5 |
-0.45 |
-0.15 |
11.4 |
80 |
3 |
0 |
1 |
7 |
1 |
1 |
0 |
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3 |
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1.78 |
2.57 |
31.2 |
-1.25 |
-0.42 |
18.0 |
84 |
3 |
3 |
3 |
3 |
1 |
2 |
0 |
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4 |
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1.49 |
2.37 |
31.9 |
-2.46 |
-0.45 |
28.5 |
82 |
5 |
2 |
5 |
3 |
1 |
1 |
0 |
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5 |
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2.58 |
4.41 |
34.2 |
2.30 |
0.78 |
1.1 |
75 |
0 |
0 |
1 |
13 |
5 |
0 |
1 |
9Z9 2006 A
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6 |
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1.48 |
2.43 |
34.4 |
-2.45 |
-0.43 |
31.1 |
83 |
6 |
3 |
4 |
3 |
2 |
1 |
0 |
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7 |
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2.53 |
5.15 |
36.4 |
2.56 |
0.95 |
2.3 |
80 |
0 |
1 |
2 |
15 |
2 |
0 |
0 |
9Z9 2006 A
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8 |
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2.51 |
5.15 |
42.2 |
3.07 |
1.05 |
1.1 |
72 |
0 |
1 |
1 |
16 |
6 |
0 |
1 |
9Z9 2006 A
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9 |
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1.79 |
2.57 |
49.5 |
-2.19 |
-0.62 |
26.7 |
80 |
9 |
6 |
4 |
2 |
1 |
2 |
0 |
LPE 2015 A
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10 |
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1.48 |
2.42 |
56.8 |
-2.57 |
-0.66 |
30.1 |
80 |
12 |
7 |
5 |
1 |
2 |
1 |
0 |
LPE 2015 A
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11 |
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1.93 |
1.94 |
57.6 |
0.57 |
0.25 |
8.1 |
74 |
2 |
4 |
3 |
11 |
9 |
2 |
1 |
9Z9 2006 A
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12 |
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1.25 |
1.25 |
58.6 |
-1.02 |
-0.23 |
19.7 |
79 |
3 |
2 |
1 |
10 |
2 |
1 |
0 |
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13 |
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1.92 |
2.02 |
58.8 |
-2.09 |
-0.70 |
24.9 |
81 |
9 |
10 |
3 |
1 |
2 |
1 |
0 |
LPE 2015 A NAG 1 D NAG 2 D
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14 |
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1.94 |
1.96 |
59.7 |
-1.01 |
-0.19 |
15.8 |
81 |
4 |
8 |
3 |
7 |
4 |
2 |
0 |
NAG 1 D NAG 2 D
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15 |
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1.39 |
1.59 |
66.6 |
-1.09 |
-0.35 |
12.4 |
83 |
4 |
3 |
4 |
6 |
5 |
1 |
0 |
LPE 2014 A LPE 2015 A LPE 2016 A
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16 |
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2.86 |
4.64 |
67.7 |
0.71 |
0.44 |
5.2 |
78 |
3 |
1 |
7 |
15 |
6 |
3 |
1 |
UK0 2003 A LPE 2007 A PCW 2008 A Y01 2020 A
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17 |
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1.93 |
2.01 |
94.4 |
-0.84 |
-0.25 |
16.8 |
80 |
9 |
12 |
4 |
10 |
6 |
2 |
0 |
PCW 2011 A LPE 2015 A
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18 |
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2.41 |
2.40 |
103.9 |
1.73 |
0.66 |
3.7 |
70 |
5 |
0 |
4 |
25 |
14 |
5 |
1 |
UK0 2003 A 9Z9 2006 A PCW 2012 A LPE 2013 A LPE
2014 A PCW 2019 A
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19 |
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2.44 |
2.42 |
106.6 |
1.87 |
0.75 |
3.9 |
72 |
5 |
1 |
5 |
27 |
12 |
5 |
0 |
UK0 2003 A 9Z9 2006 A PCW 2012 A LPE 2013 A LPE
2014 A PCW 2019 A
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20 |
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2.12 |
2.38 |
116.5 |
1.25 |
0.56 |
5.0 |
73 |
6 |
0 |
4 |
25 |
12 |
5 |
0 |
UK0 2003 A PCW 2011 A PCW 2012 A LPE 2013 A LPE
2014 A PCW 2019 A
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21 |
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1.94 |
1.98 |
123.4 |
0.31 |
0.24 |
10.4 |
72 |
8 |
8 |
4 |
17 |
13 |
7 |
0 |
UK0 2003 A PCW 2012 A LPE 2013 A LPE 2014 A PCW
2019 A NAG 1 D NAG 2 D
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22 |
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2.40 |
2.40 |
126.6 |
1.24 |
0.56 |
4.6 |
73 |
6 |
1 |
8 |
25 |
12 |
8 |
1 |
UK0 2003 A LPE 2007 A PCW 2008 A PCW 2012 A LPE
2013 A LPE 2014 A PCW 2019 A Y01 2020 A
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23 |
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1.26 |
1.57 |
158.0 |
0.37 |
0.28 |
11.3 |
79 |
6 |
5 |
14 |
20 |
10 |
3 |
0 |
LPE 2007 A PCW 2008 A LPE 2009 A LPE 2010 A Y01
2020 A LPE 304 B
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24 |
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1.21 |
1.74 |
163.2 |
-0.61 |
-0.04 |
16.9 |
80 |
11 |
11 |
9 |
15 |
9 |
3 |
0 |
NAG 303 B LPE 304 B
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25 |
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1.29 |
1.62 |
187.1 |
1.09 |
0.54 |
7.3 |
76 |
5 |
5 |
14 |
31 |
19 |
1 |
2 |
UK0 2003 A 9Z9 2006 A LPE 2007 A PCW 2008 A LPE
2009 A LPE 2010 A Y01 2020 A LPE 304 B
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26 |
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1.12 |
1.56 |
40.8 |
1.25 |
0.34 |
5.2 |
81 |
1 |
0 |
3 |
5 |
1 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program