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PDBsum entry 8itf

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8itf calculated with MOLE 2.0 PDB id
8itf
Pores calculated on whole structure Pores calculated excluding ligands

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16 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.17 1.59 25.3 0.58 0.17 7.0 76 0 2 0 7 3 1 1  
2 3.45 3.65 33.0 -0.20 -0.35 3.8 84 1 1 5 3 1 0 0  
3 2.78 3.86 33.0 -0.53 -0.33 6.6 79 2 1 5 3 1 0 0  
4 1.28 2.14 40.9 1.76 0.37 3.9 75 0 1 1 9 3 0 1  
5 1.28 1.82 45.0 0.60 -0.04 3.9 84 1 2 5 7 1 0 0  
6 1.60 1.61 47.7 0.14 0.16 11.9 77 5 1 1 3 2 0 0  
7 1.28 2.69 50.7 1.16 0.43 2.8 73 0 1 1 9 5 1 1  
8 1.16 1.84 57.0 -0.60 -0.05 8.7 80 1 1 7 10 8 1 1  
9 1.32 1.66 77.1 -0.57 -0.31 10.2 82 4 5 8 8 6 2 2  
10 1.22 2.03 91.4 0.45 0.37 5.2 77 1 2 6 17 12 0 2  8IA 601 R
11 1.26 1.43 105.0 -1.01 -0.06 11.6 78 5 3 5 5 9 1 1  
12 2.79 3.90 106.2 -1.52 -0.62 15.1 88 6 5 7 4 1 0 0  
13 1.38 1.83 131.8 -0.71 -0.07 16.5 77 12 5 2 13 7 2 1  
14 1.41 1.42 135.9 -1.20 -0.36 15.6 83 12 7 11 9 6 1 2  
15 1.33 2.29 143.2 -1.85 -0.32 18.0 83 11 6 9 6 9 0 0  
16 1.60 1.69 249.4 -1.66 -0.46 19.8 84 14 14 10 7 5 3 0  
17 1.28 1.31 252.5 -1.30 -0.41 15.2 86 12 11 13 8 5 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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