spacer
spacer

PDBsum entry 8irr

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8irr calculated with MOLE 2.0 PDB id
8irr
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.48 1.59 83.5 -1.99 -0.35 26.5 82 14 5 4 4 3 1 0  
2 1.50 4.05 112.5 -1.47 -0.36 20.2 82 14 7 9 6 6 2 3  
3 1.45 1.50 122.3 -1.40 -0.30 20.8 81 15 5 5 7 5 1 3  
4 1.42 1.60 157.7 -1.40 -0.53 15.6 86 12 8 19 9 3 1 4  
5 1.38 1.47 157.1 -1.97 -0.56 20.7 86 15 9 18 8 3 1 1  
6 1.34 1.37 166.9 -1.77 -0.50 19.8 86 16 7 14 9 2 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer