PDBsum entry 8iod Go to PDB code:  Tunnel analysis for: 8iod calculated with MOLE 2.0 PDB id 8iod Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.45 32.1 -1.41 -0.33 17.8 75 4 2 3 4 3 0 0   2 1.40 1.44 45.9 -1.54 -0.30 16.4 79 4 2 6 5 4 0 0   3 1.40 1.45 49.3 -1.63 -0.25 19.4 80 8 2 6 5 4 0 0   4 1.35 1.72 63.9 -1.49 -0.18 17.1 79 7 3 6 7 5 1 0   5 1.06 2.72 37.4 1.25 0.47 2.6 86 0 2 6 8 5 1 0  4J2 4 L 6 1.20 1.58 17.4 1.95 0.46 1.3 81 0 0 1 7 0 1 0   7 1.39 1.59 16.8 -0.86 -0.47 4.8 93 0 1 2 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.