spacer
spacer

PDBsum entry 8ihj

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8ihj calculated with MOLE 2.0 PDB id
8ihj
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.41 1.71 31.3 -1.80 -0.52 24.9 77 3 3 1 0 2 0 0  
2 1.15 1.39 38.8 0.08 0.04 12.3 78 4 2 2 5 4 0 2  
3 1.43 1.63 95.2 -1.50 -0.32 17.1 87 8 5 11 4 4 1 0  
4 1.41 1.63 105.7 -1.09 -0.31 13.4 84 8 6 7 5 6 1 0  
5 1.57 1.62 133.1 -1.62 -0.47 19.6 83 7 9 7 5 4 2 0  
6 2.33 3.26 39.5 -1.18 -0.43 16.6 84 6 2 5 3 2 1 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer