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PDBsum entry 8ied

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8ied calculated with MOLE 2.0 PDB id
8ied
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 2.63 33.5 -1.14 -0.15 16.2 86 3 5 3 4 3 0 0  
2 1.59 2.94 37.3 -1.36 -0.32 9.9 80 2 1 2 2 1 3 0  
3 1.30 2.88 47.9 -1.55 -0.32 22.4 87 6 1 3 4 1 0 0  
4 1.27 2.91 51.1 -1.53 -0.32 24.5 84 7 2 1 5 1 0 0  
5 1.59 2.74 55.2 -1.61 -0.24 10.2 79 3 2 4 1 2 3 0  
6 2.08 3.27 72.9 -1.19 -0.19 21.1 80 6 3 2 4 2 0 0  
7 2.08 3.27 76.7 -1.20 -0.19 13.2 85 5 2 4 3 3 0 0  
8 2.09 3.28 80.1 -1.02 -0.22 20.5 81 6 3 1 6 2 0 0  
9 1.31 2.94 99.1 -1.34 -0.07 24.7 81 9 2 1 7 3 0 0  
10 2.54 3.27 100.9 -1.32 -0.38 15.8 85 7 3 6 3 3 0 0  
11 1.35 2.91 155.6 -1.47 -0.31 17.4 84 11 3 9 7 6 0 0  
12 3.62 5.31 34.1 0.15 0.10 8.8 91 2 1 3 3 3 0 0  PC1 601 A PC1 601 B
13 2.23 2.68 36.8 0.54 0.46 9.4 75 4 0 2 9 2 0 2  PC1 601 B
14 2.50 2.55 42.5 -0.17 0.18 13.0 84 5 0 3 5 3 0 2  PC1 601 A PC1 601 B
15 1.63 1.63 48.9 0.67 0.51 7.2 74 4 0 2 10 3 0 2  PC1 601 B
16 1.54 1.65 50.0 -0.49 0.15 11.8 83 2 2 2 5 6 0 0  PC1 601 A PC1 601 B
17 2.24 2.62 50.6 0.54 0.41 7.5 82 4 0 3 12 5 0 0  PC1 601 A PC1 601 B
18 2.54 2.56 52.0 -0.69 0.06 16.4 85 6 2 4 4 3 0 2  PC1 601 A PC1 601 B
19 1.54 1.66 57.2 0.20 0.31 10.1 77 3 1 1 9 7 0 1  PC1 601 A PC1 601 B
20 2.10 2.15 38.3 -1.18 -0.48 15.1 90 5 1 6 3 0 1 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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