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PDBsum entry 8hwh

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 8hwh calculated with MOLE 2.0 PDB id
8hwh
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.91 2.91 39.8 -1.56 -0.50 19.7 83 3 4 4 1 1 1 1  DT 1 S DT 2 S
2 1.68 3.18 44.7 -2.60 -0.46 17.6 89 4 1 6 1 1 0 0  
3 2.96 2.96 60.1 -1.60 -0.44 21.0 77 4 7 4 1 2 4 2  DT 1 S DT 2 S DT 4 S DT 5 S DT 6 S
4 2.98 2.98 67.9 -2.36 -0.34 31.2 76 9 3 2 1 3 2 1  DT 1 S DT 2 S DT 6 S
5 4.01 4.22 71.5 -2.07 -0.53 29.2 80 5 10 6 1 1 2 3  DT 4 S DT 5 S DT 6 S
6 1.73 2.50 76.9 -2.19 -0.49 16.6 90 3 2 7 3 1 0 0  
7 3.43 3.65 80.0 -2.65 -0.48 35.2 79 10 8 3 1 2 1 1  DT 4 S DT 5 S DT 6 S
8 1.20 2.36 84.5 0.06 0.26 13.1 76 5 3 2 9 5 1 0  
9 3.42 3.66 85.2 -2.81 -0.46 37.5 78 11 6 3 0 2 1 2  DT 6 S
10 1.68 2.50 113.4 -2.22 -0.55 22.8 83 7 4 8 3 2 2 1  DT 1 S DT 2 S
11 1.68 2.52 126.6 -2.25 -0.58 26.0 81 9 6 8 2 3 1 1  DT 6 S
12 1.72 2.57 135.9 -2.21 -0.56 26.8 82 9 10 10 3 2 2 2  DT 4 S DT 5 S DT 6 S
13 1.46 1.95 141.0 -1.30 -0.19 20.7 82 14 5 7 10 3 1 0  DT 6 S
14 1.24 1.37 175.6 -1.91 -0.42 25.0 85 12 12 14 6 4 2 2  DT 4 S DT 5 S DT 6 S

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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