PDBsum entry 8hug

Pore analysis for: 8hug calculated with

MOLE 2.0

PDB id

8hug

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.21

2.81

31.1

-3.10

-0.64

39.8

78

7

2

1

2

0

1

0

2

3.80

4.34

34.5

-3.50

-0.71

44.4

79

7

8

1

1

0

1

0

3

1.75

2.00

37.0

-2.53

-0.68

30.1

83

7

6

3

2

0

1

0

4

2.08

2.10

37.4

-1.54

-0.47

17.9

83

6

4

4

2

1

1

0

GTP 303 A

5

1.71

1.82

41.7

-2.01

-0.45

29.3

84

6

7

4

4

0

0

0

6

3.80

4.34

43.1

-3.18

-0.62

40.4

78

7

7

1

0

1

1

0

GOL 302 A

7

2.07

2.11

59.1

-2.14

-0.47

27.2

83

8

10

5

4

1

1

0

GTP 303 A

8

1.97

2.05

62.8

-2.57

-0.46

24.7

78

8

4

5

3

3

2

0

9

2.06

2.12

66.4

-2.01

-0.43

25.7

82

8

9

5

3

2

1

0

GOL 302 A GTP 303 A

10

1.72

3.95

68.8

-0.98

-0.34

14.0

84

4

4

5

6

0

1

0

11

1.72

1.86

74.6

-1.99

-0.48

25.9

85

10

8

4

3

1

0

0

GTP 303 A

12

1.72

3.84

74.6

-1.41

-0.38

17.2

85

6

4

5

7

0

1

0

13

1.52

2.76

101.0

-1.50

-0.45

18.9

84

8

5

6

8

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.