spacer
spacer

PDBsum entry 8hmv

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 8hmv calculated with MOLE 2.0 PDB id
8hmv
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.32 4.00 31.0 -2.37 -0.88 12.6 87 2 2 7 1 0 0 0  
2 1.17 1.17 35.3 -1.07 -0.13 19.2 80 6 2 2 5 1 1 0  
3 1.20 1.20 50.2 -1.30 -0.12 20.9 82 7 2 4 6 1 1 0  
4 1.26 1.44 66.2 -1.08 -0.26 22.4 76 6 4 2 3 3 0 0  
5 1.73 3.33 71.2 -1.57 -0.52 17.4 89 7 3 8 4 1 0 1  
6 1.40 1.83 25.2 -1.60 -0.39 22.1 78 3 4 1 0 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer