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PDBsum entry 8hmc

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Pore analysis for: 8hmc calculated with MOLE 2.0 PDB id
8hmc
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 28 pores, coloured by radius 28 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 2.04 27.2 0.68 0.39 11.8 78 2 2 1 5 2 0 0  
2 1.24 3.45 49.3 -2.32 -0.17 33.0 75 5 4 2 3 1 0 0  
3 2.57 3.38 51.8 -1.79 -0.41 24.0 75 6 4 2 1 2 1 1  
4 2.16 2.18 59.1 -1.15 -0.15 21.1 79 7 4 4 5 2 0 0  
5 1.20 1.50 64.5 -1.75 -0.51 16.2 87 5 5 9 4 2 1 1  
6 1.55 2.38 75.8 -2.10 -0.67 18.1 91 8 8 13 3 0 1 0  
7 2.25 2.37 81.3 -1.61 -0.48 22.2 77 9 7 4 5 0 1 1  
8 1.21 1.57 107.3 -1.87 -0.41 18.3 81 10 11 14 7 4 4 1  
9 1.55 1.60 116.6 -2.07 -0.55 18.7 85 13 11 15 8 2 3 0  
10 2.19 2.78 118.3 -1.98 -0.44 23.9 79 12 13 9 11 3 4 0  
11 1.18 1.55 125.1 -1.87 -0.49 19.9 83 12 12 14 7 3 3 1  
12 1.20 1.56 128.2 -1.47 -0.30 20.9 81 8 8 9 11 3 1 1  
13 1.98 2.08 129.8 -2.05 -0.39 22.3 76 15 10 9 5 4 0 1  
14 2.01 2.28 136.3 -1.76 -0.36 21.3 80 16 11 10 6 5 1 0  
15 1.50 2.40 135.9 -1.97 -0.57 20.0 87 14 13 16 9 1 3 0  
16 1.31 2.55 139.0 -1.64 -0.43 20.7 86 10 9 11 13 1 1 0  
17 1.50 1.49 152.8 -2.21 -0.52 24.4 80 14 11 11 5 5 0 0  
18 1.98 2.10 161.3 -2.05 -0.32 25.2 75 13 13 8 7 4 1 0  
19 1.28 2.58 165.1 -1.73 -0.39 22.1 81 13 12 12 15 3 3 0  
20 2.17 2.82 165.9 -2.13 -0.49 23.0 80 11 17 14 13 3 5 0  
21 1.30 2.57 178.1 -1.13 -0.21 20.8 82 12 8 9 18 3 3 0  
22 1.28 1.27 179.5 -1.49 -0.26 21.7 79 13 14 12 13 3 2 1  
23 1.38 2.23 188.8 -1.22 -0.27 18.6 81 16 7 14 16 4 5 2  
24 1.59 2.37 190.3 -1.59 -0.35 21.8 82 15 15 14 15 1 2 0  
25 1.80 1.94 217.6 -1.85 -0.33 21.1 82 18 7 12 9 4 3 1  
26 1.25 1.17 218.4 -2.26 -0.60 21.1 82 13 16 22 5 5 5 1  
27 1.50 2.17 218.5 -1.67 -0.24 23.4 85 17 10 10 13 3 1 0  
28 1.82 1.94 235.2 -1.65 -0.29 21.9 84 15 10 12 14 3 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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