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PDBsum entry 8hkf

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Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 8hkf calculated with MOLE 2.0 PDB id
8hkf
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.59 2.85 58.6 -1.41 -0.09 21.2 79 12 2 2 9 2 0 0  
2 1.37 1.45 63.0 -1.27 -0.14 20.7 81 5 5 5 4 3 0 0  
3 1.46 1.62 71.6 -1.48 -0.25 18.3 81 5 5 9 7 4 0 0  
4 1.26 1.29 72.3 -1.75 -0.34 18.4 84 6 4 9 8 2 0 0  
5 1.45 1.61 86.8 -1.22 -0.18 20.7 85 8 3 8 8 4 1 0  
6 1.64 2.31 95.1 -1.95 -0.47 25.1 83 10 9 5 7 2 0 0  
7 1.32 2.86 103.3 0.81 0.28 2.9 78 2 2 6 18 6 4 0  
8 1.46 1.65 112.4 -1.09 -0.24 15.4 80 7 4 8 8 5 0 0  
9 1.85 1.94 120.9 0.57 0.30 9.8 74 5 3 5 16 7 3 0  
10 1.78 1.93 130.2 -2.15 -0.65 29.2 86 11 17 8 10 1 0 0  
11 1.30 1.35 129.9 -1.90 -0.41 21.2 86 10 6 13 8 2 1 0  
12 1.22 1.85 137.7 -0.22 0.12 12.3 81 8 3 8 14 4 3 0  
13 1.65 1.81 141.3 -2.00 -0.53 28.1 85 13 15 9 12 1 0 0  
14 1.41 1.44 144.7 -2.05 -0.58 27.2 88 10 17 10 10 1 0 0  
15 1.40 1.42 149.2 -0.45 0.08 17.8 78 9 8 9 15 8 2 0  
16 1.35 2.24 150.5 -0.36 0.15 14.4 81 13 5 11 20 5 2 0  
17 1.67 1.78 150.5 -1.66 -0.30 20.1 82 12 5 10 6 4 1 0  
18 1.23 1.85 158.9 -0.26 0.16 14.8 82 9 5 11 18 6 2 0  
19 1.66 1.87 171.0 -1.71 -0.61 21.4 86 10 15 10 11 2 0 0  
20 1.44 1.59 170.8 -0.37 0.01 14.4 78 8 6 11 17 7 3 0  
21 1.34 2.03 177.4 -0.87 -0.37 11.2 82 5 10 10 11 5 3 1  K 1304 A
22 1.66 1.82 182.2 -0.55 0.02 17.6 75 11 6 5 17 9 2 0  
23 1.20 3.30 181.2 -1.85 -0.50 23.2 87 10 17 15 15 3 0 0  
24 1.20 1.20 197.2 -0.08 0.03 10.9 80 10 9 12 19 9 3 2  
25 1.14 2.66 205.5 0.08 0.14 13.3 78 10 6 7 27 10 2 0  
26 1.19 2.93 206.4 0.17 0.29 12.9 79 7 8 14 26 11 4 0  
27 1.27 2.54 227.9 -1.09 -0.24 21.3 85 14 18 14 23 4 2 0  
28 1.08 1.12 231.9 -0.66 -0.24 12.4 81 8 10 11 17 7 3 2  K 1304 A
29 1.15 2.80 241.8 0.04 0.23 13.5 76 9 7 9 28 12 4 0  
30 1.25 1.77 329.1 -1.04 -0.23 19.1 83 27 22 20 31 11 6 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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