PDBsum entry 8hjn

Tunnel analysis for: 8hjn calculated with

MOLE 2.0

PDB id

8hjn

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

10 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

2.20

27.6

-0.24

-0.01

15.4

77

2

2

1

4

3

0

0

2

1.24

2.30

30.7

-0.05

0.08

16.1

77

4

3

1

6

3

1

0

3

1.24

2.23

31.8

-0.22

-0.01

14.8

74

2

2

1

5

3

1

0

4

1.27

2.10

48.5

-1.50

-0.23

16.2

76

3

6

5

2

5

1

0

UPG 501 A

5

1.26

2.12

49.8

-0.25

0.03

13.9

72

2

3

2

8

5

2

0

6

1.27

2.17

53.7

-0.22

0.07

14.1

75

4

2

3

9

5

1

1

7

1.27

2.20

55.1

-0.82

-0.22

11.7

76

3

3

6

4

8

2

0

UPG 501 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.