PDBsum entry 8hjg

Pore analysis for: 8hjg calculated with

MOLE 2.0

PDB id

8hjg

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.26

2.79

28.7

-1.74

-0.28

22.4

79

6

3

3

2

3

0

0

UDP 503 A TRS 504 A

2

2.16

2.82

44.4

-1.65

-0.25

12.5

76

3

3

4

1

3

3

0

3

1.93

2.27

48.3

-2.36

-0.44

27.8

81

7

5

5

0

3

0

0

4

2.31

2.52

61.9

-2.12

-0.24

21.9

76

9

3

5

1

5

1

0

5

1.56

1.72

63.9

-0.64

-0.15

13.2

79

6

2

5

9

6

3

0

UDP 503 B TRS 504 B

6

1.57

1.70

79.3

-1.34

-0.29

15.7

76

7

6

5

4

6

5

0

UDP 503 B

7

1.56

1.70

87.8

-1.44

-0.15

17.1

76

7

4

6

4

6

5

0

UDP 503 B

8

2.19

2.28

106.0

-1.48

-0.28

18.5

75

11

9

6

4

7

6

0

UDP 503 B TRS 504 B

9

2.22

2.38

114.5

-1.55

-0.18

20.2

75

11

7

7

4

7

6

0

UDP 503 B TRS 504 B

10

1.13

1.32

118.5

-1.30

-0.37

28.0

79

8

6

0

7

1

0

0

11

1.56

1.70

119.8

-1.18

-0.21

17.1

78

7

4

5

7

5

4

0

UDP 503 B

12

2.10

2.86

127.2

-1.76

-0.54

23.3

82

9

9

6

3

3

2

0

13

2.22

2.48

146.5

-1.37

-0.22

20.1

77

11

7

6

7

6

5

0

UDP 503 B TRS 504 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.