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PDBsum entry 8hir

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8hir calculated with MOLE 2.0 PDB id
8hir
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.51 1.50 72.8 -0.50 0.08 17.0 80 7 2 7 13 2 1 0  
2 1.19 1.22 92.0 -1.22 -0.25 22.4 81 12 7 6 8 5 0 0  
3 1.28 1.31 100.3 1.21 0.41 5.7 76 1 2 6 17 6 2 1  
4 2.58 2.56 103.2 2.41 0.89 1.5 74 2 0 0 28 7 2 0  K 1302 A 6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU
1301 D
5 2.30 2.54 109.6 2.53 0.86 1.9 72 1 2 2 26 9 1 1  K 1302 A 6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU
1301 D
6 2.49 5.02 110.9 0.87 0.48 8.8 78 3 6 5 21 7 2 0  6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU 1301 D
7 2.21 3.96 111.8 -0.88 -0.18 18.9 85 9 8 8 16 3 1 0  
8 1.41 1.45 111.6 -1.86 -0.47 20.9 85 10 10 17 9 5 1 0  
9 1.38 1.44 112.2 -0.26 -0.02 14.2 84 8 5 10 15 4 1 0  
10 2.39 2.55 112.7 2.43 0.84 1.9 73 1 2 2 26 9 1 1  K 1302 A 6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU
1301 D
11 1.12 1.22 117.2 -0.20 -0.04 12.9 81 4 6 13 12 6 0 1  
12 2.38 2.45 129.8 -1.17 -0.22 18.3 80 12 10 12 10 6 1 0  6OU 1301 D
13 1.34 1.41 138.5 0.39 0.24 10.7 79 5 6 9 21 8 2 0  K 1302 A 6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU
1301 D
14 1.18 1.36 138.9 -0.85 -0.28 20.1 87 8 14 7 12 1 2 0  
15 1.48 1.50 147.3 -1.52 -0.41 24.5 87 12 13 9 10 1 2 0  
16 1.40 1.45 145.9 -0.26 -0.01 16.1 77 6 8 10 14 6 0 1  
17 1.38 1.42 151.6 -1.27 -0.28 19.1 81 16 10 17 11 8 0 0  6OU 1306 A 6OU 1301 C 6OU 1301 D
18 1.48 1.53 154.3 -0.46 -0.01 15.5 75 9 8 11 18 9 1 1  6OU 1306 A 6OU 1301 B
19 2.36 2.42 162.9 -0.04 0.13 14.5 78 14 6 9 21 10 0 0  6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU 1301 D
20 2.35 2.90 171.9 -0.18 0.07 14.8 75 13 8 11 17 11 0 1  6OU 1306 A 6OU 1301 D
21 2.50 2.51 168.0 -0.47 0.00 16.5 78 9 8 10 17 7 1 1  
22 1.22 1.41 186.7 -0.56 -0.08 18.6 82 9 16 7 22 4 3 0  6OU 1301 B
23 1.96 2.12 195.2 -1.04 -0.19 21.5 82 14 16 9 20 4 3 0  6OU 1301 B
24 1.87 1.91 204.6 -1.58 -0.30 21.7 83 18 11 15 11 8 2 0  6OU 1301 D
25 1.23 2.13 215.1 -1.48 -0.29 24.5 83 23 14 14 18 3 2 2  
26 1.39 1.42 216.0 -1.57 -0.35 22.5 84 15 19 18 16 6 3 0  6OU 1306 A 6OU 1301 B
27 1.24 1.55 227.9 -0.36 0.00 17.2 79 10 18 10 24 9 3 1  6OU 1306 A 6OU 1301 B
28 1.49 1.51 226.4 -1.57 -0.34 21.4 83 20 11 20 12 10 1 0  6OU 1306 A 6OU 1301 D
29 1.90 1.94 237.7 -0.54 -0.01 17.6 80 19 7 12 22 13 1 0  6OU 1306 A 6OU 1301 B 6OU 1301 C 6OU 1301 D
30 1.82 1.82 246.7 -0.62 -0.02 17.9 78 18 9 14 19 13 1 1  6OU 1306 A 6OU 1301 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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