 |
PDBsum entry 8hgo
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 8hgo calculated with MOLE 2.0
|
PDB id
|
|
|
|
8hgo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
6 pores,
coloured by radius |
 |
8 pores,
coloured by radius
|
8 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.13 |
2.32 |
27.9 |
-0.50 |
0.08 |
15.2 |
77 |
 |
4 |
2 |
0 |
4 |
2 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.23 |
2.38 |
30.5 |
-2.50 |
-0.68 |
34.3 |
82 |
6 |
5 |
1 |
2 |
0 |
0 |
0 |
|
 |
3 |
 |
1.14 |
2.69 |
57.4 |
-1.22 |
-0.15 |
23.8 |
78 |
5 |
5 |
2 |
5 |
3 |
1 |
0 |
|
 |
4 |
 |
1.32 |
1.49 |
59.3 |
-0.09 |
0.15 |
9.2 |
80 |
4 |
2 |
2 |
7 |
3 |
3 |
0 |
|
 |
5 |
 |
2.34 |
2.83 |
70.7 |
-0.45 |
-0.19 |
14.9 |
82 |
6 |
4 |
1 |
7 |
1 |
2 |
0 |
|
 |
6 |
 |
2.23 |
2.40 |
72.2 |
-1.10 |
-0.13 |
17.1 |
80 |
6 |
5 |
5 |
6 |
3 |
2 |
0 |
|
 |
7 |
 |
1.18 |
1.32 |
73.6 |
-1.12 |
-0.34 |
16.1 |
73 |
4 |
6 |
1 |
3 |
2 |
1 |
3 |
NAG 2 D BMA 3 D MAN 4 D
|
 |
8 |
 |
1.84 |
2.01 |
121.7 |
-0.72 |
-0.06 |
14.6 |
81 |
10 |
7 |
5 |
12 |
6 |
5 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |