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PDBsum entry 8hg1

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 8hg1 calculated with MOLE 2.0 PDB id
8hg1
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.51 1.64 45.5 -1.92 -0.52 25.4 81 5 6 4 2 2 0 0  TTP 1102 A DG 24 P DC 25 P DG 4 T DA 6 T DA 7 T
2 1.51 1.64 51.0 -1.94 -0.48 25.4 83 6 7 3 4 3 0 0  TTP 1102 A DG 24 P DC 25 P DG 4 T DA 6 T DA 7 T
3 1.52 1.64 54.7 -1.60 -0.48 21.7 86 5 6 4 3 2 0 0  TTP 1102 A DG 24 P DC 25 P DG 4 T DA 6 T DA 7 T
4 1.21 2.96 56.0 0.47 0.19 6.2 81 2 2 2 8 2 2 1  TTP 1102 A DG 24 P DC 25 P DG 4 T DA 6 T DA 7 T
5 1.50 1.64 57.9 -2.09 -0.48 24.1 83 8 6 3 3 2 0 0  TTP 1102 A DG 24 P DC 25 P DG 4 T DA 6 T DA 7 T
6 1.51 1.66 66.4 -1.56 -0.33 17.5 83 7 1 3 2 2 1 0  TTP 1102 A DC 18 P DG 19 P DA 20 P DA 21 P DT 22
P DT 23 P DG 24 P DC 25 P DA 3 T DG 4 T DC 5 T DA
6 T DA 7 T
7 1.52 1.67 67.3 -2.14 -0.52 25.1 81 8 8 3 2 3 0 0  TTP 1102 A DG 24 P DC 25 P DG 4 T DA 6 T DA 7 T
8 1.21 1.35 89.3 -0.63 0.07 15.1 80 7 6 2 4 7 0 0  TTP 1102 A DG 24 P DC 25 P DA 3 T DG 4 T DA 6 T D
A 7 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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