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PDBsum entry 8hf1

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 8hf1 calculated with MOLE 2.0 PDB id
8hf1
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.82 30.0 0.33 0.07 8.4 78 1 1 1 4 1 1 0  
2 2.14 3.00 30.5 -2.35 -0.64 31.6 77 6 3 2 1 0 0 0  U 52 K
3 1.89 4.50 49.5 -1.66 -0.12 16.5 75 4 4 6 2 4 1 1  U 52 K
4 1.37 2.47 66.2 -0.80 -0.47 10.9 86 6 4 4 4 1 1 0  U 52 K
5 1.17 1.85 76.0 -0.48 0.18 12.8 73 3 3 2 9 7 2 0  
6 1.36 2.60 82.4 -1.29 -0.36 20.0 86 9 7 7 7 2 1 0  
7 1.29 1.92 108.7 -1.66 -0.54 18.0 88 4 10 15 6 5 1 0  
8 1.27 1.88 124.3 -1.98 -0.52 22.8 85 8 10 8 6 4 2 0  
9 1.30 2.60 146.7 -0.53 -0.11 17.3 82 7 11 7 14 3 3 0  G 1 E U 51 H U 52 H
10 1.26 2.14 143.4 -1.72 -0.40 21.5 84 9 9 10 8 6 2 0  G 1 J G 3 J A 4 J U 52 K
11 1.76 2.09 154.9 -1.82 -0.51 18.0 88 11 7 13 7 2 1 0  G 1 J G 3 J A 4 J C 5 J U 6 J U 7 J G 8 J C 42 K
C 43 K A 44 K A 45 K U 52 K
12 1.45 1.46 168.4 -1.36 -0.37 17.6 84 8 13 8 9 6 5 0  G 1 J U 52 K
13 1.60 1.74 183.5 -1.81 -0.49 21.2 86 14 13 11 9 3 2 1  U 52 K U 7 L G 8 L G 9 L C 42 M
14 1.19 1.51 206.5 -1.73 -0.37 22.6 82 22 12 14 19 4 4 2  
15 1.66 1.92 208.7 -1.50 -0.42 20.5 86 15 17 10 13 3 2 1  U 52 K U 7 L G 8 L G 9 L C 42 M
16 1.29 1.79 219.2 -1.71 -0.45 21.2 86 19 11 15 17 1 4 0  U 52 K G 1 L A 2 L G 3 L A 4 L C 5 L U 7 L G 8 L
G 9 L C 42 M C 43 M A 44 M U 52 M
17 1.19 1.19 404.6 -1.55 -0.32 19.7 81 31 24 21 37 13 9 1  
18 1.32 1.35 418.1 -1.56 -0.34 19.3 81 29 22 20 29 11 6 1  
19 1.30 1.39 422.9 -1.67 -0.38 20.5 81 33 23 18 28 8 8 0  
20 1.23 2.79 423.4 -1.67 -0.44 20.6 83 33 28 22 33 9 11 0  
21 1.26 1.36 470.1 -1.30 -0.30 17.2 81 30 24 26 46 12 11 2  U 52 M
22 1.21 1.37 690.3 -1.39 -0.33 18.7 82 43 30 30 42 13 12 0  G 1 E U 51 H U 52 H G 1 J G 3 J A 4 J C 5 J U 6 J
U 7 J G 8 J C 42 K C 43 K A 44 K A 45 K U 52 K

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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