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PDBsum entry 8hc4

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Pore analysis for: 8hc4 calculated with MOLE 2.0 PDB id
8hc4
Pores calculated on whole structure Pores calculated excluding ligands

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32 pores, coloured by radius 37 pores, coloured by radius 37 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.75 4.67 33.2 -1.39 -0.42 12.4 87 1 2 5 4 1 0 0  
2 1.68 1.69 35.6 -1.63 -0.35 11.2 84 2 2 3 1 2 1 0  
3 1.19 2.59 42.9 -0.90 -0.39 8.8 80 3 1 3 4 1 4 0  
4 1.42 2.37 51.2 -0.12 0.03 9.1 74 3 1 3 5 5 1 0  
5 1.43 1.42 58.6 -0.93 -0.31 18.9 77 2 8 1 7 1 4 0  
6 2.18 2.88 61.4 -1.52 -0.51 21.4 81 8 11 6 10 0 0 0  
7 1.25 1.31 62.0 -2.13 -0.45 23.3 76 7 6 4 5 3 4 0  
8 1.25 1.31 65.7 -1.78 -0.36 20.4 75 7 6 3 6 4 5 0  
9 1.19 2.39 66.3 -1.03 -0.38 17.2 87 5 5 5 10 0 0 0  
10 2.24 3.03 70.8 -1.09 -0.49 11.3 95 3 2 11 4 1 1 0  
11 1.25 2.38 76.6 -0.76 -0.30 17.3 83 9 8 6 17 0 0 0  
12 1.20 2.54 85.1 -0.37 -0.12 17.2 84 8 8 7 15 1 0 0  
13 2.16 2.87 87.7 -1.86 -0.54 21.3 83 10 8 12 10 1 0 0  
14 1.37 2.99 96.8 -1.54 -0.36 15.1 85 3 5 7 4 3 3 0  NAG 1302 A
15 1.20 2.53 100.4 -0.70 -0.12 17.0 86 7 4 8 12 1 0 0  
16 1.18 2.35 116.2 -1.45 -0.42 20.4 85 11 8 13 16 1 0 0  
17 1.29 3.73 115.6 -0.79 -0.26 17.6 85 9 11 10 19 1 0 0  
18 1.51 1.49 192.9 -1.21 -0.40 13.1 87 4 7 15 7 5 5 1  
19 1.17 1.82 215.2 -0.82 -0.34 8.4 85 7 6 18 12 5 9 0  NAG 1302 A
20 1.27 1.58 218.0 -1.14 -0.28 11.0 81 7 7 14 8 7 6 1  NAG 1306 A
21 1.27 1.36 289.3 -1.25 -0.36 16.9 84 17 16 20 19 8 6 0  NAG 1302 A
22 1.25 1.16 305.9 -1.13 -0.30 14.0 82 18 13 21 16 9 12 0  NAG 1302 A
23 1.32 2.50 32.9 -0.05 -0.26 6.3 88 1 0 4 6 2 2 0  
24 1.21 3.99 33.7 -1.64 -0.18 20.8 79 2 2 2 2 1 2 0  
25 2.35 3.64 40.2 -1.09 0.04 10.7 83 1 1 1 3 2 2 0  NAG 1302 C
26 1.27 2.07 50.7 0.22 0.48 4.4 66 2 0 1 7 3 3 0  
27 1.22 1.50 57.9 -0.15 0.07 7.3 71 2 3 2 11 3 5 1  
28 1.17 1.18 59.5 -1.16 -0.58 11.1 85 2 1 5 4 3 3 0  
29 1.22 1.48 72.0 -0.19 -0.21 7.9 77 2 2 4 6 1 4 1  
30 1.15 2.19 101.2 0.12 0.13 11.5 75 4 3 6 12 3 4 3  
31 1.21 2.28 104.4 -0.94 -0.54 11.9 93 4 5 7 4 1 2 0  
32 1.15 2.10 105.3 0.14 -0.11 13.0 77 4 2 4 7 1 3 3  
33 1.26 2.32 135.4 -0.03 -0.10 8.4 81 3 4 9 15 6 4 0  
34 1.17 1.22 186.1 -0.58 -0.13 9.9 81 5 3 11 13 10 2 0  
35 1.20 1.19 258.8 -1.33 -0.43 12.6 84 8 7 16 11 6 4 0  
36 1.23 1.27 266.3 -1.31 -0.54 11.2 85 7 8 18 8 6 3 1  NAG 1303 C
37 2.82 3.04 59.9 -1.48 -0.56 19.7 79 6 3 2 5 0 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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