 |
PDBsum entry 8hc3
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 8hc3 calculated with MOLE 2.0
|
PDB id
|
|
|
|
8hc3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
17 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.02 |
3.74 |
26.9 |
-0.36 |
-0.11 |
18.3 |
80 |
 |
2 |
7 |
0 |
4 |
1 |
2 |
0 |
 |
|
 |
 |
2 |
 |
1.82 |
2.22 |
32.3 |
-0.46 |
-0.05 |
8.6 |
86 |
3 |
1 |
5 |
5 |
1 |
1 |
0 |
|
 |
3 |
 |
1.19 |
1.73 |
50.4 |
0.74 |
0.47 |
9.8 |
84 |
3 |
2 |
5 |
12 |
2 |
1 |
0 |
|
 |
4 |
 |
1.79 |
1.83 |
54.2 |
-0.83 |
-0.36 |
10.9 |
93 |
4 |
0 |
9 |
4 |
1 |
0 |
1 |
|
 |
5 |
 |
2.07 |
2.06 |
65.4 |
-0.82 |
-0.22 |
19.0 |
80 |
9 |
6 |
8 |
10 |
2 |
0 |
0 |
|
 |
6 |
 |
1.41 |
1.52 |
70.4 |
-0.38 |
0.12 |
9.3 |
80 |
3 |
4 |
4 |
7 |
6 |
0 |
0 |
|
 |
7 |
 |
1.20 |
2.83 |
91.3 |
0.37 |
0.05 |
10.7 |
81 |
8 |
4 |
7 |
18 |
2 |
1 |
0 |
|
 |
8 |
 |
1.61 |
1.58 |
97.2 |
-0.95 |
-0.51 |
10.0 |
81 |
2 |
4 |
6 |
6 |
2 |
2 |
0 |
|
 |
9 |
 |
2.48 |
3.72 |
110.8 |
-1.78 |
-0.37 |
19.2 |
84 |
8 |
5 |
13 |
3 |
6 |
0 |
2 |
|
 |
10 |
 |
1.66 |
1.95 |
127.3 |
-0.65 |
-0.32 |
11.9 |
86 |
5 |
5 |
10 |
9 |
3 |
2 |
0 |
NAG 1305 B NAG 1308 C
|
 |
11 |
 |
1.80 |
1.88 |
136.4 |
-1.14 |
-0.31 |
12.2 |
84 |
5 |
4 |
13 |
7 |
8 |
2 |
2 |
|
 |
12 |
 |
1.62 |
1.95 |
138.1 |
0.06 |
-0.02 |
11.4 |
86 |
4 |
4 |
5 |
9 |
3 |
0 |
0 |
|
 |
13 |
 |
1.56 |
1.63 |
150.1 |
-1.37 |
-0.30 |
12.0 |
81 |
7 |
8 |
11 |
5 |
9 |
4 |
0 |
NAG 1305 B
|
 |
14 |
 |
2.45 |
4.26 |
162.2 |
-1.58 |
-0.41 |
17.6 |
83 |
8 |
12 |
14 |
7 |
5 |
5 |
0 |
|
 |
15 |
 |
2.67 |
2.73 |
176.7 |
-1.22 |
-0.34 |
12.4 |
80 |
10 |
7 |
13 |
8 |
9 |
4 |
0 |
|
 |
16 |
 |
1.26 |
2.60 |
183.2 |
-0.51 |
-0.20 |
6.8 |
83 |
5 |
4 |
17 |
17 |
7 |
4 |
1 |
NAG 1308 C
|
 |
17 |
 |
1.71 |
1.90 |
183.1 |
-0.75 |
-0.36 |
14.2 |
84 |
7 |
9 |
13 |
16 |
4 |
1 |
0 |
NAG 1305 B NAG 1308 C
|
 |
18 |
 |
1.49 |
1.63 |
186.9 |
-1.45 |
-0.36 |
17.3 |
83 |
13 |
11 |
16 |
7 |
7 |
5 |
2 |
NAG 1305 B
|
 |
19 |
 |
2.38 |
3.75 |
193.5 |
-1.39 |
-0.36 |
17.7 |
82 |
16 |
10 |
16 |
9 |
7 |
5 |
2 |
|
 |
20 |
 |
1.43 |
1.77 |
204.5 |
-0.79 |
-0.15 |
16.1 |
80 |
8 |
12 |
15 |
16 |
8 |
4 |
1 |
|
 |
21 |
 |
1.19 |
1.22 |
213.3 |
-1.87 |
-0.53 |
21.1 |
81 |
24 |
20 |
20 |
10 |
8 |
4 |
1 |
|
 |
22 |
 |
1.39 |
2.04 |
218.0 |
-0.56 |
0.01 |
12.7 |
82 |
10 |
7 |
15 |
16 |
11 |
3 |
1 |
NAG 1307 A
|
 |
23 |
 |
1.84 |
1.98 |
218.9 |
-1.04 |
-0.31 |
13.8 |
82 |
12 |
9 |
14 |
12 |
9 |
6 |
2 |
|
 |
24 |
 |
1.41 |
2.02 |
224.8 |
-1.01 |
-0.16 |
14.1 |
77 |
5 |
14 |
14 |
12 |
13 |
7 |
1 |
|
 |
25 |
 |
1.18 |
1.20 |
231.0 |
-1.94 |
-0.61 |
24.5 |
83 |
22 |
22 |
16 |
11 |
5 |
2 |
0 |
NAG 1305 B NAG 1308 C
|
 |
26 |
 |
1.47 |
1.97 |
235.5 |
-0.83 |
-0.17 |
13.3 |
77 |
7 |
15 |
10 |
13 |
12 |
5 |
1 |
NAG 1305 B
|
 |
27 |
 |
1.58 |
1.65 |
243.0 |
-1.11 |
-0.31 |
13.2 |
80 |
14 |
13 |
13 |
11 |
10 |
8 |
0 |
NAG 1305 B
|
 |
28 |
 |
1.40 |
2.09 |
275.0 |
-1.08 |
-0.14 |
17.2 |
81 |
12 |
10 |
16 |
11 |
10 |
3 |
1 |
NAG 1307 A
|
 |
29 |
 |
1.19 |
1.32 |
322.9 |
-0.59 |
-0.10 |
12.7 |
81 |
8 |
15 |
17 |
22 |
12 |
7 |
1 |
NAG 1307 A NAG 1303 B NAG 1304 B
|
 |
30 |
 |
1.44 |
2.33 |
355.5 |
-0.80 |
-0.06 |
12.7 |
82 |
14 |
9 |
22 |
16 |
16 |
3 |
1 |
NAG 1307 A
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |