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PDBsum entry 8hc3

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Pore analysis for: 8hc3 calculated with MOLE 2.0 PDB id
8hc3
Pores calculated on whole structure Pores calculated excluding ligands

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17 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.02 3.74 26.9 -0.36 -0.11 18.3 80 2 7 0 4 1 2 0  
2 1.82 2.22 32.3 -0.46 -0.05 8.6 86 3 1 5 5 1 1 0  
3 1.19 1.73 50.4 0.74 0.47 9.8 84 3 2 5 12 2 1 0  
4 1.79 1.83 54.2 -0.83 -0.36 10.9 93 4 0 9 4 1 0 1  
5 2.07 2.06 65.4 -0.82 -0.22 19.0 80 9 6 8 10 2 0 0  
6 1.41 1.52 70.4 -0.38 0.12 9.3 80 3 4 4 7 6 0 0  
7 1.20 2.83 91.3 0.37 0.05 10.7 81 8 4 7 18 2 1 0  
8 1.61 1.58 97.2 -0.95 -0.51 10.0 81 2 4 6 6 2 2 0  
9 2.48 3.72 110.8 -1.78 -0.37 19.2 84 8 5 13 3 6 0 2  
10 1.66 1.95 127.3 -0.65 -0.32 11.9 86 5 5 10 9 3 2 0  NAG 1305 B NAG 1308 C
11 1.80 1.88 136.4 -1.14 -0.31 12.2 84 5 4 13 7 8 2 2  
12 1.62 1.95 138.1 0.06 -0.02 11.4 86 4 4 5 9 3 0 0  
13 1.56 1.63 150.1 -1.37 -0.30 12.0 81 7 8 11 5 9 4 0  NAG 1305 B
14 2.45 4.26 162.2 -1.58 -0.41 17.6 83 8 12 14 7 5 5 0  
15 2.67 2.73 176.7 -1.22 -0.34 12.4 80 10 7 13 8 9 4 0  
16 1.26 2.60 183.2 -0.51 -0.20 6.8 83 5 4 17 17 7 4 1  NAG 1308 C
17 1.71 1.90 183.1 -0.75 -0.36 14.2 84 7 9 13 16 4 1 0  NAG 1305 B NAG 1308 C
18 1.49 1.63 186.9 -1.45 -0.36 17.3 83 13 11 16 7 7 5 2  NAG 1305 B
19 2.38 3.75 193.5 -1.39 -0.36 17.7 82 16 10 16 9 7 5 2  
20 1.43 1.77 204.5 -0.79 -0.15 16.1 80 8 12 15 16 8 4 1  
21 1.19 1.22 213.3 -1.87 -0.53 21.1 81 24 20 20 10 8 4 1  
22 1.39 2.04 218.0 -0.56 0.01 12.7 82 10 7 15 16 11 3 1  NAG 1307 A
23 1.84 1.98 218.9 -1.04 -0.31 13.8 82 12 9 14 12 9 6 2  
24 1.41 2.02 224.8 -1.01 -0.16 14.1 77 5 14 14 12 13 7 1  
25 1.18 1.20 231.0 -1.94 -0.61 24.5 83 22 22 16 11 5 2 0  NAG 1305 B NAG 1308 C
26 1.47 1.97 235.5 -0.83 -0.17 13.3 77 7 15 10 13 12 5 1  NAG 1305 B
27 1.58 1.65 243.0 -1.11 -0.31 13.2 80 14 13 13 11 10 8 0  NAG 1305 B
28 1.40 2.09 275.0 -1.08 -0.14 17.2 81 12 10 16 11 10 3 1  NAG 1307 A
29 1.19 1.32 322.9 -0.59 -0.10 12.7 81 8 15 17 22 12 7 1  NAG 1307 A NAG 1303 B NAG 1304 B
30 1.44 2.33 355.5 -0.80 -0.06 12.7 82 14 9 22 16 16 3 1  NAG 1307 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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