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PDBsum entry 8hc2

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Pore analysis for: 8hc2 calculated with MOLE 2.0 PDB id
8hc2
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.40 3.58 38.6 -0.80 -0.20 11.6 71 3 1 3 1 1 2 3  
2 2.62 4.59 39.0 -1.13 -0.51 10.0 91 3 0 10 4 0 0 1  
3 1.43 1.52 46.1 -0.17 -0.11 10.6 91 2 1 4 5 1 0 0  
4 1.23 1.41 50.2 -1.04 -0.57 4.6 86 1 2 5 1 0 4 0  
5 1.64 2.25 71.4 -0.14 -0.03 10.1 88 4 2 8 10 1 1 0  
6 2.35 2.53 82.5 -1.43 -0.38 12.6 84 5 4 10 4 4 2 0  
7 1.84 2.36 88.0 -1.58 -0.43 18.7 87 7 5 10 5 1 3 0  
8 2.35 2.59 88.5 -1.13 -0.33 13.5 84 5 4 10 5 3 1 2  
9 1.28 2.00 88.3 -1.21 -0.28 14.9 80 6 5 11 7 5 3 0  
10 1.37 2.57 90.3 -1.75 -0.44 17.1 81 6 6 11 5 1 7 2  NAG 1306 C
11 1.35 1.99 91.1 -1.58 -0.43 17.4 82 9 5 13 7 5 2 0  
12 1.41 2.61 95.2 -1.88 -0.39 20.2 84 9 6 9 6 3 3 0  
13 1.17 1.17 94.7 -1.23 -0.28 11.5 83 4 3 10 3 6 1 0  
14 1.42 2.54 104.9 -1.82 -0.40 19.4 80 7 9 10 4 4 6 0  
15 1.25 2.42 109.1 -1.05 -0.18 17.7 83 10 4 9 12 4 1 2  
16 1.21 1.23 109.8 -1.06 -0.24 13.4 83 10 6 11 10 4 4 0  
17 2.51 2.79 133.4 -0.94 -0.23 17.0 81 6 7 10 13 3 3 1  
18 1.16 2.93 134.0 -0.48 -0.01 16.9 80 6 10 11 16 4 1 0  
19 1.25 1.29 147.0 -1.06 -0.35 15.8 83 10 10 13 16 4 5 0  
20 1.52 2.13 147.0 -1.25 -0.47 14.8 80 5 14 11 10 3 4 0  
21 1.35 2.09 155.0 -1.33 -0.34 19.5 80 10 12 14 15 5 3 0  
22 1.18 1.95 154.1 -0.61 -0.22 12.2 78 5 5 8 11 6 3 0  NAG 1308 A NAG 1305 C
23 1.36 1.94 201.1 -1.07 -0.20 17.3 76 11 12 13 16 10 6 3  
24 1.26 1.28 203.6 -1.31 -0.45 17.2 83 12 18 17 14 5 2 0  
25 2.07 3.18 203.2 -0.88 -0.37 13.6 80 8 8 8 7 4 6 1  
26 1.16 1.34 218.9 -0.77 -0.37 12.0 83 8 7 10 9 5 3 2  
27 2.12 3.13 263.4 -1.10 -0.39 14.2 81 10 11 15 13 7 10 0  
28 1.15 1.31 269.2 -1.20 -0.45 15.5 86 14 11 17 11 6 4 0  
29 2.11 2.13 271.6 -1.16 -0.38 16.8 81 14 13 12 15 7 9 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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