spacer
spacer

PDBsum entry 8h5c

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8h5c calculated with MOLE 2.0 PDB id
8h5c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.54 2.11 52.2 -0.74 -0.11 13.7 75 3 3 4 8 3 1 0  NAG 1 D FUC 3 D
2 1.50 1.75 77.2 -1.38 -0.16 22.0 78 11 7 2 4 7 1 0  NAG 2 D FUC 3 D
3 1.47 1.73 89.4 -1.51 -0.18 19.9 77 10 6 5 7 6 2 0  NAG 1 D NAG 2 D FUC 3 D
4 1.23 1.27 100.7 -1.09 -0.28 15.6 80 8 6 7 5 9 2 0  NAG 2 D FUC 3 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer