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PDBsum entry 8h40

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 8h40 calculated with MOLE 2.0 PDB id
8h40
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.15 1.27 17.9 -0.35 -0.11 11.9 79 0 2 2 4 1 1 0  
2 1.14 1.26 25.2 1.74 0.45 7.0 81 0 2 2 11 1 0 0  
3 1.14 1.26 31.5 1.49 0.43 5.8 80 0 2 3 11 1 1 0  
4 1.25 1.72 16.1 2.76 0.78 6.2 80 0 2 0 9 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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