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PDBsum entry 8h2a

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Pore analysis for: 8h2a calculated with MOLE 2.0 PDB id
8h2a
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.50 26.1 -2.24 -0.26 23.3 72 3 2 1 1 2 1 0  
2 2.23 2.25 38.6 -0.82 -0.12 20.6 76 3 3 1 4 3 1 0  NAD 401 B
3 2.69 2.99 39.0 -1.57 -0.44 23.9 73 3 4 0 3 1 1 0  
4 3.15 3.90 58.8 -1.72 -0.66 14.9 92 3 4 9 4 0 2 1  
5 3.41 5.24 60.7 -1.35 -0.49 13.7 87 5 4 6 4 0 3 1  
6 3.33 3.73 61.3 -2.09 -0.65 25.3 81 7 8 4 2 1 1 0  
7 3.35 3.74 70.9 -1.29 -0.57 15.3 84 7 6 6 4 1 1 1  
8 2.49 2.68 79.1 -1.66 -0.61 13.2 89 6 4 8 4 0 3 1  
9 2.88 3.95 79.5 -1.69 -0.61 16.4 86 5 6 6 4 0 3 2  
10 2.52 2.74 89.3 -1.61 -0.65 14.9 86 8 6 9 4 1 1 1  
11 2.98 3.99 96.0 -1.74 -0.66 17.5 83 7 8 6 4 1 2 2  
12 1.39 1.50 96.4 -1.32 -0.64 12.8 84 6 4 6 3 1 3 2  
13 1.25 1.24 107.8 -1.52 -0.37 19.9 80 10 8 8 8 5 3 0  NAD 401 A
14 1.67 4.85 110.5 -2.27 -0.48 23.6 81 15 6 11 3 3 4 2  
15 1.27 1.27 114.6 -1.01 -0.24 14.9 82 10 7 10 8 6 4 2  NAD 401 A
16 1.16 1.16 118.6 -1.30 -0.32 17.1 82 9 7 12 9 5 3 2  NAD 401 A
17 1.55 4.37 118.5 -2.13 -0.51 22.1 85 13 8 11 5 2 3 1  
18 2.18 2.65 126.3 -1.89 -0.62 17.5 86 8 8 11 4 3 1 0  
19 1.58 1.98 127.1 -1.82 -0.41 23.7 83 13 7 12 6 2 2 1  
20 1.82 3.29 130.6 -2.07 -0.51 22.0 81 14 8 10 6 3 5 2  
21 1.84 3.30 133.8 -2.27 -0.52 23.8 83 15 9 13 4 3 5 2  
22 2.01 3.43 137.5 -1.85 -0.46 19.9 83 13 7 14 6 3 5 4  
23 1.74 4.79 134.9 -2.58 -0.49 26.6 78 17 5 11 1 4 3 1  
24 1.23 1.23 139.2 -1.67 -0.41 20.9 79 14 11 10 7 6 2 0  NAD 401 A
25 1.19 1.19 139.1 -1.21 -0.26 16.3 78 12 6 10 6 7 3 1  NAD 401 A
26 1.18 1.18 154.8 -1.61 -0.44 17.4 82 12 10 14 9 5 4 2  NAD 401 A
27 1.83 4.52 155.0 -2.27 -0.53 23.8 78 16 7 10 4 4 4 1  
28 1.84 4.43 158.3 -2.49 -0.54 25.5 80 17 8 13 2 4 4 1  
29 1.58 1.99 166.6 -1.52 -0.54 18.1 85 9 8 9 8 3 0 1  
30 1.19 1.18 257.1 -1.91 -0.42 22.2 82 24 14 22 12 7 4 1  NAD 401 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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