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PDBsum entry 8h11

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Pore analysis for: 8h11 calculated with MOLE 2.0 PDB id
8h11
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.44 3.04 44.0 -1.55 -0.33 16.9 84 4 2 5 3 1 0 0  
2 1.59 2.83 55.9 -1.12 -0.49 7.6 89 3 3 11 6 1 0 0  
3 2.00 3.44 69.1 -1.76 -0.33 18.3 82 5 5 5 5 3 1 0  
4 1.19 2.10 78.6 -0.58 -0.22 9.9 84 3 2 6 9 3 1 0  
5 1.14 2.10 89.7 -1.00 -0.18 12.3 77 4 6 7 6 8 2 0  
6 2.01 3.19 110.2 -1.04 -0.29 19.2 79 6 8 8 10 5 1 2  
7 2.60 2.78 114.9 -0.92 -0.29 13.8 81 6 7 11 11 4 0 2  
8 2.60 3.05 123.3 -1.47 -0.32 15.6 79 7 9 9 7 6 1 0  
9 2.80 2.92 131.8 -1.34 -0.34 15.8 79 7 8 9 6 7 1 2  
10 2.60 2.75 132.7 -0.79 -0.26 16.4 83 7 6 9 13 3 0 2  
11 1.15 2.09 134.9 -0.41 -0.15 13.8 80 5 7 9 13 6 1 2  
12 2.92 4.44 136.7 -1.25 -0.33 21.9 83 12 6 7 8 2 2 2  NAG 1304 C
13 2.42 2.48 139.0 -1.40 -0.47 18.0 84 10 11 14 18 3 0 0  
14 2.07 3.28 140.8 -1.68 -0.38 22.3 83 13 10 11 9 3 3 0  NAG 1304 C
15 2.43 2.51 140.9 -1.37 -0.42 17.1 84 13 11 16 19 3 1 0  
16 1.73 1.94 142.0 -1.49 -0.37 19.0 79 11 6 8 5 5 3 2  NAG 1304 C
17 1.09 1.35 145.1 -1.00 -0.25 16.6 78 6 9 10 12 8 2 2  
18 2.00 3.41 147.6 -1.09 -0.30 17.2 82 6 13 15 16 5 1 0  
19 2.59 2.76 151.9 -1.51 -0.36 20.1 86 13 8 12 9 1 2 0  NAG 1304 C
20 1.09 1.35 156.3 -0.73 -0.19 14.5 81 7 7 11 12 6 1 2  
21 2.00 3.47 164.5 -1.32 -0.33 17.8 81 7 15 13 11 8 2 0  
22 1.16 2.11 165.5 -1.11 -0.26 17.6 84 11 9 12 12 3 3 0  NAG 1304 C
23 1.09 1.35 169.9 -0.45 -0.13 12.3 80 5 8 11 15 8 2 2  
24 2.59 3.20 174.0 -1.27 -0.34 19.0 84 12 12 14 13 2 2 0  NAG 1304 C
25 2.56 2.80 175.6 -1.19 -0.32 16.0 83 8 13 14 11 6 1 0  
26 1.09 1.35 175.4 -0.70 -0.22 14.4 80 6 10 13 16 7 1 2  
27 1.72 1.94 188.5 -0.95 -0.26 15.5 79 7 12 11 12 10 2 2  
28 1.83 2.30 190.2 -1.09 -0.25 16.8 81 7 14 13 9 8 1 0  NAG 1304 B
29 0.99 0.99 209.3 -1.11 -0.39 15.6 82 12 12 14 23 7 6 1  NAG 1309 A NAG 1313 A NAG 1302 B
30 2.69 2.69 214.1 -1.53 -0.38 20.4 83 14 13 13 9 5 3 0  NAG 1304 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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