PDBsum entry 8gpy Go to PDB code:  Tunnel analysis for: 8gpy calculated with MOLE 2.0 PDB id 8gpy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.41 23.7 -0.36 -0.07 3.3 80 1 0 1 1 4 0 1   2 1.11 1.93 20.2 -0.65 -0.38 16.9 88 1 2 2 4 2 0 0   3 1.40 2.53 18.3 0.61 0.65 1.5 63 0 0 1 2 5 1 0   4 1.39 2.59 19.0 0.89 0.73 2.4 66 0 1 1 2 5 0 0   5 1.50 2.73 16.3 0.75 0.31 1.7 65 0 0 1 4 4 0 1   6 1.54 3.45 16.4 0.63 0.27 1.8 62 0 0 1 2 4 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.