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PDBsum entry 8geb

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8geb calculated with MOLE 2.0 PDB id
8geb
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.76 1.79 88.5 -1.82 -0.42 18.9 84 9 4 4 1 3 1 0  
2 1.75 2.95 107.3 -1.69 -0.38 19.3 85 14 5 10 3 4 2 2  
3 1.29 2.41 152.5 -1.77 -0.44 20.3 84 16 7 11 4 5 2 2  
4 1.31 2.41 170.5 -1.71 -0.47 19.4 84 13 7 11 5 4 2 2  
5 1.52 1.87 186.6 -0.75 0.05 17.2 77 12 6 3 10 7 1 2  
6 1.52 1.85 186.5 -0.21 0.15 14.9 77 9 5 3 11 6 0 2  
7 1.12 2.26 192.5 -0.80 -0.31 14.2 87 10 8 13 12 5 1 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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