PDBsum entry 8gdb Go to PDB code:  Pore analysis for: 8gdb calculated with MOLE 2.0 PDB id 8gdb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.92 2.15 32.8 -0.97 -0.39 16.9 80 4 2 2 3 1 0 1   2 1.66 1.89 36.0 -1.72 -0.41 18.6 83 5 3 4 2 2 0 0   3 2.38 3.12 47.5 -1.10 -0.57 10.8 85 5 2 5 4 1 0 0   4 1.92 2.15 56.0 -1.10 -0.41 12.2 82 3 3 7 6 2 0 1   5 1.11 1.67 56.0 -0.35 -0.27 15.6 86 2 3 4 6 1 1 0   6 1.28 1.34 85.5 -0.61 -0.08 12.4 82 3 2 4 10 3 4 0  P2E 501 R 7 1.17 1.82 108.8 -1.08 -0.22 18.7 83 5 6 4 7 1 1 0   8 1.24 1.91 180.9 -0.04 -0.03 10.8 79 9 4 7 26 6 5 0  P2E 501 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.