PDBsum entry 8gcp

Pore analysis for: 8gcp calculated with

MOLE 2.0

PDB id

8gcp

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

2.79

28.1

-0.06

-0.02

3.7

87

1

0

2

7

2

2

0

P2E 501 R

2

1.59

3.02

28.2

-0.18

-0.04

5.8

88

1

0

3

7

2

2

0

P2E 501 R

3

1.21

1.21

29.3

0.39

0.29

1.9

70

0

0

3

3

5

1

1

4

1.27

1.27

30.0

2.18

0.46

1.9

79

1

0

3

9

1

0

1

5

1.29

1.30

39.5

1.50

0.25

4.6

77

1

1

3

9

1

2

2

6

1.55

2.03

39.9

-0.70

0.35

14.3

72

4

0

0

6

5

0

0

7

2.40

3.10

52.4

-1.39

-0.36

21.0

78

7

2

4

4

2

1

4

8

2.09

2.15

55.8

-0.11

0.16

7.6

69

1

2

2

3

3

2

0

9

1.21

2.98

70.0

0.37

0.02

4.4

82

2

0

6

16

4

3

0

P2E 501 R

10

1.17

2.39

72.5

0.66

0.10

5.7

83

3

2

4

16

3

1

0

P2E 501 R

11

1.14

2.78

86.5

0.46

0.06

5.0

80

4

1

5

18

5

3

0

P2E 501 R

12

1.19

1.24

100.8

-0.77

-0.04

11.1

79

7

5

10

11

11

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.