spacer
spacer

PDBsum entry 8g0b

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 8g0b calculated with MOLE 2.0 PDB id
8g0b
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.94 7.09 33.0 1.91 1.05 7.0 99 5 0 7 18 0 0 0  
2 3.95 7.09 33.1 1.95 1.07 6.8 99 5 0 7 16 0 0 0  
3 3.95 7.16 33.3 1.85 1.04 7.0 100 5 0 7 19 0 0 0  
4 3.87 6.98 34.0 4.34 1.66 0.1 92 0 0 0 36 0 0 0  
5 3.84 6.92 34.0 4.33 1.65 0.1 91 0 0 0 34 0 0 0  
6 3.87 6.98 34.1 4.35 1.66 0.1 92 0 0 0 37 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer