PDBsum entry 8fyt

Pore analysis for: 8fyt calculated with

MOLE 2.0

PDB id

8fyt

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.16

2.23

29.1

-1.33

-0.74

11.5

90

1

4

3

1

0

1

0

2

2.12

2.19

37.4

-2.16

-0.49

25.8

85

4

2

3

3

1

1

0

3

1.50

2.14

40.4

-1.43

-0.73

15.4

87

3

4

3

2

0

1

0

4

2.35

3.68

41.2

-1.53

-0.42

20.5

81

7

3

5

2

2

1

2

5

1.16

2.77

41.5

-2.66

-0.74

31.8

85

4

6

4

1

1

0

0

6

1.80

1.79

52.1

-2.23

-0.43

31.0

84

6

4

2

2

2

0

0

J40 502 R

7

1.80

2.63

60.8

-1.58

-0.58

21.9

88

8

6

4

5

0

0

0

8

1.35

2.67

66.5

-2.06

-0.74

24.9

85

6

8

5

2

1

0

0

9

1.62

2.91

70.3

-1.36

-0.50

20.8

89

8

7

4

5

0

1

0

10

1.20

2.79

92.0

-1.77

-0.59

23.9

87

10

9

5

6

1

0

0

11

1.95

2.62

99.1

-1.82

-0.49

26.7

88

11

9

4

7

1

0

0

J40 502 R

12

1.22

1.76

37.7

0.04

0.29

11.9

84

3

2

2

6

2

1

0

7LD 501 R

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.