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PDBsum entry 8fnh

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8fnh calculated with MOLE 2.0 PDB id
8fnh
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.43 1.69 27.0 -0.98 -0.37 15.4 76 4 0 0 1 1 1 0  DC 31 E DC 32 E DG 33 E DA 10 F DA 11 F
2 1.25 1.47 28.6 -1.44 -0.69 13.2 83 3 1 2 1 0 1 0  DT 17 E DA 25 K DT 26 K DT 15 L DC 16 L DT 17 L
3 1.85 1.86 30.1 -2.41 -0.67 26.7 87 4 2 3 1 0 0 0  DC 30 E DA 12 F
4 2.72 2.72 32.9 -0.20 -0.58 3.0 60 0 0 0 1 1 1 0  DC 19 E DT 20 E DT 29 E DT 13 F DC 14 F DT 15 F
DC 16 F DT 17 F DA 18 F DG 19 F DC 20 F DA 21 F
DLU 304 G DG 18 K DT 17 L DA 18 L DG 19 L DC 20 L
DA 21 L
5 1.93 1.94 44.5 -2.35 -0.57 26.4 77 5 1 3 0 1 0 0  DG 22 E DA 23 E DG 24 E DA 12 F DT 13 F DC 14 F
6 2.65 2.65 45.1 -0.50 -0.76 7.0 92 0 1 0 1 0 0 0  DC 19 E DT 15 F DC 16 F DT 17 F DA 18 F DG 19 F
DC 20 F DA 21 F DLU 304 G DG 18 K DA 25 K DT 26 K
DT 15 L DC 16 L DT 17 L DA 18 L DG 19 L DC 20 L D
A 21 L
7 1.26 1.37 46.8 -1.42 -0.66 12.1 80 3 1 2 0 0 2 0  DT 17 F DA 18 F DG 19 F DC 20 F DA 21 F DLU 304 G
DT 17 K DG 18 K DC 19 K DT 17 L DA 18 L DG 19 L
DC 20 L DA 21 L
8 1.26 1.36 47.1 -1.29 -0.67 10.6 83 3 1 2 0 0 1 0  DT 17 E DG 18 E DC 19 E DT 17 F DA 18 F DG 19 F
DC 20 F DA 21 F DLU 304 G DG 18 K DT 17 L DA 18 L
DG 19 L DC 20 L DA 21 L
9 1.27 1.29 48.1 -1.39 -0.63 13.0 82 3 2 2 1 0 2 0  DT 15 F DC 16 F DT 17 F DT 17 K DG 18 K DC 19 K D
A 25 K DT 26 K DT 15 L DC 16 L DT 17 L
10 2.68 2.67 47.8 -0.70 -0.18 12.9 63 2 1 0 1 2 1 0  DT 20 E DG 22 E DA 23 E DG 24 E DC 14 F DT 15 F
DC 16 F DA 25 K DT 26 K DT 15 L DC 16 L
11 1.97 2.13 48.3 -0.55 -0.76 7.5 89 1 1 0 1 0 0 0  DA 25 E DT 26 E DT 15 F DC 16 F DT 17 F DA 18 F
DG 19 F DC 20 F DA 21 F DLU 304 G DG 18 K DC 19 K
DT 15 L DC 16 L DT 17 L DA 18 L DG 19 L DC 20 L D
A 21 L
12 1.27 1.37 51.6 -1.28 -0.64 12.0 84 4 2 2 1 0 1 0  DT 17 E DG 18 E DC 19 E DA 25 E DT 26 E DT 15 F
DC 16 F DT 17 F DT 15 L DC 16 L DT 17 L
13 1.28 1.37 53.9 -1.60 -0.26 15.4 73 5 1 2 1 2 1 0  DT 17 E DG 18 E DC 19 E DT 20 E DG 22 E DA 23 E
DG 24 E DC 14 F DT 15 F DC 16 F DT 17 F DT 17 L
14 1.85 1.86 55.8 -1.32 -0.41 16.6 80 4 1 3 1 1 1 0  DT 29 E DT 13 F DC 14 F DT 15 F DC 16 F DT 20 K
DG 22 K DA 12 L DT 13 L DC 14 L DT 15 L DC 16 L
15 1.26 1.37 60.4 -1.68 -0.61 13.8 81 6 2 4 0 0 3 0  DT 17 E DG 18 E DC 19 E DC 16 F DT 17 F DT 17 K
DG 18 K DC 19 K DC 16 L DT 17 L
16 1.93 1.95 62.7 -2.54 -0.71 23.1 88 9 2 9 2 0 0 0  DC 30 K DA 12 L
17 1.03 1.29 63.6 -1.00 -0.18 19.6 82 6 2 4 7 1 1 0  DC 30 K DA 12 L
18 1.26 1.37 69.0 -1.75 -0.48 18.4 80 7 2 5 1 1 2 0  DT 17 F DT 17 K DG 18 K DC 19 K DT 20 K DG 22 K D
A 12 L DT 13 L DC 14 L DT 15 L DC 16 L DT 17 L
19 1.26 1.36 69.8 -1.76 -0.50 18.1 82 7 2 5 1 1 1 0  DT 17 E DG 18 E DC 19 E DT 20 E DG 22 E DA 12 F
DT 13 F DC 14 F DT 15 F DC 16 F DT 17 F DT 17 L
20 1.89 1.95 69.7 -1.23 -0.52 14.5 77 4 1 2 1 1 1 0  DT 17 F DA 18 F DG 19 F DC 20 F DA 21 F DLU 304 G
DG 18 K DC 19 K DT 20 K DG 22 K DA 12 L DT 13 L
DC 14 L DT 15 L DC 16 L DT 17 L DA 18 L DG 19 L
DC 20 L DA 21 L
21 2.52 2.55 73.6 -2.04 -0.62 17.0 80 6 1 5 1 2 1 0  DG 22 E DA 23 E DG 24 E DT 29 E DT 13 F DC 14 F
22 1.85 1.86 74.3 -1.87 -0.71 20.2 86 5 3 4 1 0 1 0  DA 25 K DT 26 K DT 27 K DT 28 K DT 29 K DC 30 K D
A 12 L DT 13 L DC 14 L DT 15 L
23 1.92 1.95 76.3 -2.02 -0.70 22.9 84 7 4 4 2 0 1 0  DA 25 E DT 26 E DT 15 F DC 16 F DT 29 K DC 30 K D
A 12 L DT 13 L DC 14 L DT 15 L
24 1.97 2.13 76.5 -1.65 -0.75 13.7 87 5 2 5 1 0 1 0  DA 25 E DT 26 E DT 27 E DT 28 E DT 29 E DT 13 F
DC 14 F DT 15 F
25 2.51 2.54 78.7 -2.11 -0.72 18.9 87 7 3 7 2 0 1 0  DT 29 E DT 13 F DC 14 F DT 15 F DA 25 K DT 26 K
DT 15 L DC 16 L
26 1.33 1.41 78.4 -0.87 -0.40 9.7 80 2 3 3 2 2 2 0  DLU 304 A DA 15 E DC 16 E DT 17 E DG 19 F DC 20 F
DA 21 F DG 19 L DC 20 L DA 21 L
27 2.51 2.57 78.9 -1.97 -0.74 15.7 87 6 2 7 1 0 1 0  DA 25 K DT 26 K DT 27 K DT 28 K DT 29 K DT 13 L
DC 14 L DT 15 L
28 1.26 1.37 81.9 -1.58 -0.51 16.4 79 7 2 5 1 1 3 0  DT 20 E DG 22 E DA 12 F DT 13 F DC 14 F DT 15 F
DC 16 F DT 17 F DT 17 K DG 18 K DC 19 K DC 16 L
DT 17 L
29 1.27 1.31 82.7 -1.53 -0.50 15.6 81 7 2 4 1 1 2 0  DT 17 E DG 18 E DC 19 E DC 16 F DT 17 F DT 20 K
DG 22 K DA 12 L DT 13 L DC 14 L DT 15 L DC 16 L
DT 17 L
30 2.54 2.58 99.4 -1.58 -0.57 12.3 81 6 1 7 2 2 2 0  DT 17 F DA 18 F DG 19 F DC 20 F DA 21 F DLU 304 G
DG 18 K DC 19 K DT 20 K DT 29 K DT 13 L DC 14 L
DT 15 L DC 16 L DT 17 L DA 18 L DG 19 L DC 20 L D
A 21 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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