 |
PDBsum entry 8fd0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 8fd0 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
8fd0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
9 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.47 |
1.54 |
16.4 |
-1.85 |
0.01 |
20.7 |
73 |
|
2 |
1 |
0 |
2 |
2 |
2 |
0 |
|
|
 |
|
2 |
 |
1.44 |
1.45 |
16.3 |
-2.21 |
-0.31 |
25.3 |
71 |
2 |
2 |
0 |
1 |
2 |
2 |
0 |
|
|
3 |
 |
1.25 |
1.25 |
25.7 |
-0.67 |
-0.21 |
10.8 |
73 |
2 |
1 |
0 |
2 |
3 |
2 |
0 |
|
|
4 |
 |
2.23 |
2.38 |
18.7 |
2.24 |
0.87 |
0.7 |
69 |
0 |
0 |
0 |
8 |
2 |
2 |
0 |
|
|
5 |
 |
1.29 |
1.49 |
18.9 |
3.24 |
1.12 |
0.8 |
82 |
0 |
0 |
0 |
8 |
0 |
0 |
1 |
|
|
6 |
 |
2.47 |
2.71 |
15.6 |
1.51 |
0.28 |
1.2 |
76 |
0 |
0 |
1 |
5 |
2 |
0 |
0 |
|
|
7 |
 |
2.35 |
2.57 |
17.2 |
1.81 |
0.50 |
0.9 |
65 |
0 |
0 |
1 |
4 |
3 |
0 |
0 |
|
 |
8 |
 |
1.70 |
2.24 |
22.6 |
1.80 |
0.72 |
0.9 |
63 |
0 |
0 |
0 |
4 |
4 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program