 |
PDBsum entry 8f8s
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 8f8s calculated with MOLE 2.0
|
PDB id
|
|
|
|
8f8s
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
30 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.52 |
3.37 |
30.9 |
-2.39 |
-0.45 |
27.9 |
84 |
 |
4 |
3 |
3 |
2 |
1 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.12 |
3.14 |
38.1 |
-2.59 |
-0.39 |
27.7 |
76 |
6 |
6 |
2 |
2 |
2 |
1 |
0 |
|
 |
3 |
 |
2.26 |
3.37 |
44.7 |
-0.87 |
-0.40 |
15.0 |
93 |
3 |
3 |
6 |
6 |
0 |
0 |
0 |
HIC 73 C
|
 |
4 |
 |
1.52 |
3.37 |
45.4 |
-2.42 |
-0.30 |
30.8 |
76 |
8 |
5 |
1 |
2 |
2 |
1 |
0 |
HIC 73 D
|
 |
5 |
 |
1.90 |
1.99 |
46.8 |
-1.05 |
-0.26 |
17.7 |
83 |
5 |
4 |
3 |
7 |
2 |
1 |
0 |
HIC 73 C
|
 |
6 |
 |
1.91 |
2.00 |
46.8 |
-2.25 |
-0.42 |
28.0 |
82 |
7 |
5 |
4 |
2 |
2 |
1 |
0 |
HIC 73 D
|
 |
7 |
 |
1.47 |
2.92 |
48.2 |
-2.24 |
-0.37 |
28.0 |
82 |
5 |
3 |
2 |
3 |
2 |
0 |
0 |
HIC 73 C ADP 401 C
|
 |
8 |
 |
1.49 |
2.93 |
52.3 |
-2.48 |
-0.34 |
29.2 |
78 |
7 |
5 |
2 |
2 |
3 |
1 |
0 |
HIC 73 F
|
 |
9 |
 |
1.48 |
3.04 |
55.0 |
-1.61 |
-0.35 |
21.7 |
85 |
5 |
7 |
3 |
5 |
1 |
1 |
0 |
HIC 73 D
|
 |
10 |
 |
2.02 |
2.05 |
59.4 |
-1.65 |
-0.33 |
19.0 |
79 |
5 |
4 |
3 |
5 |
4 |
0 |
0 |
HIC 73 B
|
 |
11 |
 |
1.94 |
1.94 |
59.7 |
-1.33 |
-0.37 |
18.6 |
86 |
5 |
6 |
4 |
6 |
2 |
0 |
0 |
HIC 73 B HIC 73 C
|
 |
12 |
 |
1.47 |
2.94 |
62.3 |
-1.49 |
-0.42 |
22.7 |
86 |
6 |
7 |
2 |
6 |
1 |
0 |
0 |
HIC 73 B ADP 401 C
|
 |
13 |
 |
1.28 |
1.30 |
64.3 |
-1.22 |
-0.21 |
20.7 |
82 |
9 |
6 |
3 |
9 |
2 |
0 |
0 |
ADP 401 A MG 402 A
|
 |
14 |
 |
1.17 |
1.19 |
69.5 |
-1.15 |
-0.27 |
19.9 |
82 |
7 |
6 |
2 |
8 |
2 |
2 |
0 |
HIC 73 F
|
 |
15 |
 |
1.95 |
1.94 |
71.4 |
-1.70 |
-0.44 |
21.8 |
84 |
6 |
9 |
5 |
6 |
2 |
1 |
0 |
HIC 73 B HIC 73 C
|
 |
16 |
 |
1.22 |
1.30 |
74.8 |
-1.37 |
-0.24 |
22.8 |
81 |
10 |
7 |
3 |
10 |
2 |
1 |
0 |
ADP 401 A MG 402 A
|
 |
17 |
 |
1.21 |
1.63 |
77.3 |
-1.75 |
-0.38 |
24.2 |
82 |
8 |
6 |
2 |
8 |
3 |
1 |
0 |
HIC 73 F
|
 |
18 |
 |
1.48 |
3.11 |
77.9 |
-1.97 |
-0.42 |
24.3 |
83 |
8 |
8 |
4 |
5 |
3 |
1 |
0 |
HIC 73 E
|
 |
19 |
 |
2.13 |
3.14 |
78.5 |
-2.06 |
-0.37 |
22.6 |
77 |
7 |
8 |
4 |
5 |
5 |
1 |
0 |
HIC 73 B
|
 |
20 |
 |
1.47 |
3.07 |
90.5 |
-1.95 |
-0.30 |
26.9 |
82 |
10 |
9 |
2 |
7 |
2 |
1 |
0 |
HIC 73 E
|
 |
21 |
 |
1.24 |
1.31 |
93.4 |
-1.06 |
-0.31 |
16.4 |
81 |
9 |
6 |
7 |
7 |
4 |
1 |
0 |
ADP 401 A MG 402 A HIC 73 C
|
 |
22 |
 |
1.21 |
1.30 |
107.1 |
-1.40 |
-0.34 |
20.7 |
82 |
12 |
8 |
6 |
8 |
3 |
1 |
0 |
ADP 401 A MG 402 A ADP 401 C
|
 |
23 |
 |
1.52 |
1.77 |
109.0 |
-1.70 |
-0.55 |
21.9 |
87 |
9 |
11 |
10 |
10 |
3 |
0 |
0 |
HIC 73 D HIC 73 E
|
 |
24 |
 |
1.62 |
1.61 |
113.0 |
-1.55 |
-0.40 |
22.1 |
84 |
14 |
12 |
6 |
9 |
4 |
1 |
0 |
HIC 73 D HIC 73 E
|
 |
25 |
 |
1.55 |
3.38 |
114.2 |
-1.90 |
-0.50 |
25.2 |
85 |
13 |
13 |
5 |
9 |
3 |
0 |
0 |
HIC 73 D HIC 73 E
|
 |
26 |
 |
1.32 |
1.50 |
117.7 |
-1.49 |
-0.35 |
23.5 |
84 |
11 |
11 |
3 |
12 |
1 |
2 |
0 |
HIC 73 E HIC 73 F
|
 |
27 |
 |
1.56 |
2.98 |
143.9 |
-1.70 |
-0.39 |
20.2 |
83 |
12 |
7 |
10 |
9 |
6 |
0 |
0 |
|
 |
28 |
 |
1.47 |
3.02 |
144.9 |
-1.64 |
-0.37 |
21.6 |
83 |
16 |
10 |
8 |
7 |
6 |
1 |
0 |
HIC 73 D
|
 |
29 |
 |
1.51 |
3.04 |
152.6 |
-1.80 |
-0.39 |
23.0 |
82 |
15 |
10 |
7 |
7 |
6 |
1 |
0 |
HIC 73 D
|
 |
30 |
 |
1.27 |
1.41 |
174.4 |
-1.27 |
-0.39 |
17.7 |
84 |
12 |
9 |
12 |
16 |
6 |
1 |
0 |
HIC 73 F
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |