PDBsum entry 8f3d Go to PDB code:  Pore analysis for: 8f3d calculated with MOLE 2.0 PDB id 8f3d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.77 2.63 83.4 -2.01 -0.06 24.4 65 7 8 0 3 10 0 0   2 2.21 3.53 111.4 -2.33 -0.75 22.2 85 9 12 7 3 0 2 0   3 1.22 2.05 135.6 -1.97 -0.46 24.8 83 15 10 8 6 2 3 0   4 1.34 1.35 163.4 -0.93 -0.15 16.4 79 10 13 5 14 5 5 0   5 1.28 2.64 171.2 -1.43 -0.39 20.8 80 13 12 7 12 5 3 1   6 1.28 1.29 178.1 -0.82 -0.23 15.6 80 12 13 6 14 6 4 1   7 1.21 3.16 210.3 -1.56 -0.42 21.9 81 17 14 8 12 6 2 1   8 1.61 2.49 222.7 -1.39 -0.38 19.8 86 19 11 11 15 1 4 0   9 1.70 2.54 225.9 -1.33 -0.37 18.8 87 19 11 12 14 1 4 0   10 1.62 2.46 228.9 -1.34 -0.38 19.1 86 20 11 10 14 1 4 0   11 1.58 2.41 242.6 -1.08 -0.23 16.8 85 20 10 16 24 4 4 0   12 1.35 1.35 251.6 -2.46 -0.45 29.0 77 34 21 8 10 7 7 0   13 1.19 1.19 257.2 -1.09 -0.17 19.9 80 21 15 12 20 8 5 1   14 1.29 1.29 268.0 -1.25 -0.30 20.5 80 21 20 7 16 8 5 1   15 1.29 2.58 259.7 -1.46 -0.30 22.8 81 22 15 12 20 8 2 2   16 1.24 2.55 272.1 -1.93 -0.33 24.2 76 26 20 11 13 11 6 1   17 1.48 2.14 272.2 -0.95 -0.17 17.6 82 21 14 11 23 9 4 1   18 1.29 2.43 276.7 -1.49 -0.36 21.2 81 25 17 10 16 6 4 2   19 1.74 2.43 280.1 -1.34 -0.37 20.3 86 23 13 11 18 1 4 0   20 1.51 2.05 296.0 -1.05 -0.18 18.4 82 22 17 11 23 10 5 1   21 1.20 1.20 322.0 -0.86 -0.21 16.8 80 21 19 12 23 13 4 2   22 1.18 1.19 326.5 -0.75 -0.14 16.6 83 22 15 11 29 7 5 1   23 1.25 2.54 333.6 -1.80 -0.44 23.8 79 31 19 14 16 8 10 1   24 1.47 1.49 357.6 -1.43 -0.33 21.0 80 32 20 14 19 8 12 1   25 1.31 1.31 345.3 -0.77 -0.15 16.6 83 23 15 13 30 7 6 1   26 1.31 1.31 345.8 -0.78 -0.16 16.7 83 23 15 13 29 7 6 1   27 1.34 1.35 363.4 -1.13 -0.30 18.6 83 26 18 12 21 6 8 1   28 1.35 1.35 367.6 -1.78 -0.47 23.7 84 35 19 12 15 1 8 0   29 1.26 2.39 366.1 -1.00 -0.26 17.6 82 20 14 17 25 10 6 2   30 1.19 2.64 384.1 -1.26 -0.24 20.0 78 30 18 18 23 14 11 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.