spacer
spacer

PDBsum entry 8f0f

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 8f0f calculated with MOLE 2.0 PDB id
8f0f
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.34 2.60 18.1 0.71 0.11 11.3 90 1 3 0 4 0 1 0  X7H 201 B
2 1.71 2.69 18.6 0.58 0.07 12.8 87 1 2 0 8 0 0 0  X7H 201 B
3 1.92 2.19 18.8 0.59 0.04 9.0 82 1 2 0 5 1 2 0  X7H 201 B
4 1.66 2.49 19.9 1.04 0.18 8.1 83 1 1 0 6 1 1 0  X7H 201 B
5 1.19 1.32 21.7 0.81 0.16 11.1 86 1 2 0 7 0 0 0  X7H 201 B
6 1.61 2.43 22.5 0.62 0.04 12.6 94 1 4 0 8 0 0 0  X7H 201 B
7 1.18 1.30 25.7 1.13 0.22 7.8 85 1 1 0 7 1 1 0  X7H 201 B
8 1.19 1.31 27.3 0.67 0.03 11.0 94 1 4 0 8 0 0 0  X7H 201 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer