PDBsum entry 8efb

Pore analysis for: 8efb calculated with

MOLE 2.0

PDB id

8efb

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.45

1.68

28.1

-1.02

-0.26

11.2

90

3

1

7

3

3

1

0

2

1.21

1.37

30.2

-0.95

-0.09

7.8

87

3

1

5

3

4

0

0

3

2.63

2.82

40.3

-1.73

-0.41

9.1

90

1

2

7

1

2

1

0

4

3.70

4.34

48.5

-2.52

-0.52

30.5

82

6

6

2

2

2

1

0

5

1.26

2.10

75.4

1.51

0.82

7.1

76

3

2

1

12

5

1

1

WH2 500 R

6

2.01

2.19

77.4

-2.20

-0.63

25.3

85

8

8

4

4

2

1

0

7

1.19

2.14

96.4

-1.78

-0.29

21.4

79

9

4

5

5

3

0

1

8

1.19

1.48

122.4

-1.64

-0.32

21.0

81

12

4

6

8

3

1

1

9

1.25

1.51

132.9

-2.05

-0.41

23.6

81

13

8

7

6

5

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.