PDBsum entry 8dph Go to PDB code:  Tunnel analysis for: 8dph calculated with MOLE 2.0 PDB id 8dph Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 2.04 34.3 1.66 0.43 2.8 81 1 0 3 12 4 0 0   2 1.13 1.37 23.0 1.13 0.43 1.7 76 0 0 1 6 3 0 1   3 1.19 2.61 15.5 -0.13 0.23 24.2 86 2 3 0 4 0 0 0   4 1.23 2.36 17.3 2.12 0.71 1.2 67 0 0 1 5 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.