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PDBsum entry 8dcr

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8dcr calculated with MOLE 2.0 PDB id
8dcr
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.51 31.6 -0.30 0.04 13.2 72 2 4 3 3 5 0 2  Y00 401 R
2 1.46 1.57 82.6 -1.35 -0.56 10.8 87 4 1 10 8 1 0 0  
3 2.66 2.59 129.8 -1.53 -0.51 13.3 88 8 4 13 5 2 0 0  
4 1.19 1.15 160.2 -1.32 -0.31 16.2 84 16 4 13 10 4 1 3  
5 0.57 0.29 248.8 -0.39 0.10 15.8 76 14 9 9 18 13 2 3  Y00 401 R

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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