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PDBsum entry 8dba
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Pore analysis for: 8dba calculated with MOLE 2.0 PDB id
8dba
Pores calculated on whole structure Pores calculated excluding ligands
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45 pores, coloured by radius 62 pores, coloured by radius 62 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.85 29.9 -1.69 -0.42 29.3 80 4 5 1 3 0 1 0  
2 1.58 2.01 34.3 -1.62 -0.34 26.0 82 4 6 2 5 1 0 0  
3 1.31 1.30 41.0 -0.52 -0.11 22.8 81 5 5 1 7 2 0 0  
4 1.76 3.09 42.5 -1.06 -0.29 21.1 83 7 5 0 6 1 0 0  ADP 601 J MG 603 J
5 1.39 1.97 44.2 -0.89 -0.26 16.2 89 6 3 2 6 1 0 0  ADP 601 L
6 1.31 1.31 45.0 -0.83 -0.35 17.7 85 7 5 0 6 1 0 0  ADP 601 J MG 603 J
7 1.27 1.76 50.6 0.07 -0.09 14.0 89 3 6 2 10 1 0 0  ADP 601 J MG 603 J
8 1.39 1.55 51.7 1.45 0.62 12.9 78 5 4 2 12 3 0 0  
9 1.71 3.23 52.8 -0.71 -0.23 18.8 83 8 5 0 9 2 0 0  ADP 601 L
10 2.05 2.77 53.2 -0.32 -0.05 9.5 78 2 2 5 9 3 1 0  
11 1.43 1.66 88.7 -0.79 -0.17 16.7 81 10 9 3 10 3 1 0  ADP 601 K MG 603 K
12 1.32 1.49 106.0 0.15 0.13 11.4 79 5 5 5 16 5 1 0  ADP 604 K
13 1.20 1.54 117.2 0.02 0.16 11.7 80 10 4 4 14 4 0 0  ADP 604 J
14 1.49 1.50 120.9 -1.55 -0.56 21.9 85 10 8 4 12 1 0 0  
15 1.47 1.64 126.1 0.05 0.15 14.2 79 6 7 8 14 5 2 0  
16 1.33 1.44 131.0 -0.71 -0.16 17.4 84 11 10 5 17 4 0 0  ADP 601 K MG 603 K ADP 604 K
17 1.32 1.81 136.8 -1.19 -0.43 19.3 82 10 9 6 14 2 1 0  
18 1.19 1.21 151.3 -0.33 0.04 12.4 77 8 3 6 15 5 0 0  ADP 604 G ADP 604 K
19 1.63 1.86 154.4 -0.81 -0.16 14.6 79 10 9 8 14 5 3 0  ADP 601 K MG 603 K
20 1.36 1.55 183.8 -0.72 -0.23 14.8 83 8 8 13 18 4 1 0  ADP 604 G
21 1.34 1.60 189.0 0.02 0.05 10.4 77 10 7 7 20 7 0 0  ADP 604 G ADP 604 J
22 1.31 1.35 196.7 -0.75 -0.16 15.4 82 11 10 10 21 6 2 0  ADP 601 K MG 603 K ADP 604 K
23 1.40 1.52 193.7 -1.10 -0.33 17.5 85 8 10 11 14 4 0 0  ADP 604 G
24 1.34 1.61 200.2 -1.11 -0.23 19.9 81 13 13 7 17 6 0 0  ADP 604 J
25 1.40 1.52 214.7 -1.29 -0.42 19.3 84 14 11 10 18 3 0 0  ADP 604 G
26 1.35 1.57 226.6 -1.05 -0.38 17.0 84 14 10 11 18 4 1 0  ADP 604 G
27 1.17 1.25 246.8 -1.30 -0.33 20.0 80 17 13 10 19 6 1 0  ADP 602 L
28 1.40 1.43 248.6 -0.80 -0.23 16.9 82 15 13 10 20 7 1 0  ADP 604 J
29 1.21 1.91 248.0 -0.97 -0.38 16.2 84 15 9 13 21 3 1 0  ADP 604 G
30 1.19 1.29 257.8 -1.00 -0.32 17.4 81 17 11 10 20 7 1 0  ADP 602 L
31 1.61 2.64 37.5 -1.21 -0.57 15.7 88 5 3 4 4 0 1 0  MG 602 C ADP 604 C
32 1.38 2.34 45.6 -1.43 -0.50 19.4 86 5 4 5 4 0 1 0  MG 602 E ADP 604 E
33 1.88 3.19 45.4 -0.94 -0.33 12.8 81 3 4 5 4 1 1 0  
34 1.87 3.20 46.8 -0.60 -0.24 11.2 85 3 4 4 4 1 2 0  
35 1.18 1.43 47.8 -1.40 -0.33 23.3 83 3 4 0 6 2 0 0  
36 1.76 1.76 49.7 -0.17 0.03 8.2 80 3 0 4 7 3 1 0  
37 1.29 1.51 51.9 -0.84 -0.49 12.9 91 5 2 5 6 0 1 0  MG 602 D ADP 604 D
38 1.16 1.16 52.1 -0.61 -0.24 14.5 81 5 4 2 5 2 0 0  ADP 601 F
39 1.22 1.61 59.0 -2.18 -0.61 27.7 82 7 8 3 3 1 0 0  
40 1.63 3.00 64.4 -1.06 -0.25 16.5 77 6 5 3 9 3 0 0  ADP 601 D
41 1.29 1.51 67.6 -0.64 -0.34 10.5 85 6 2 9 7 2 2 0  MG 602 D ADP 604 D
42 1.19 1.59 71.7 -1.86 -0.40 28.5 81 7 8 3 5 1 0 0  
43 1.20 1.17 72.8 -0.80 -0.30 14.6 82 5 4 4 7 2 2 0  ADP 601 F
44 1.35 2.12 82.5 -0.05 -0.12 13.6 75 4 4 2 13 4 1 0  
45 1.91 2.81 92.6 -1.82 -0.34 23.7 81 10 4 5 10 3 0 0  
46 1.31 1.20 99.1 -0.46 -0.05 13.8 81 7 5 4 11 4 0 0  ADP 601 F
47 1.60 2.63 108.3 -1.49 -0.56 20.0 87 9 6 5 7 0 1 0  MG 602 C ADP 604 C
48 1.21 1.11 115.3 -0.84 -0.15 16.7 83 8 7 5 10 4 0 0  ADP 601 F
49 1.32 1.52 119.6 -1.72 -0.52 23.2 88 13 7 8 9 0 1 0  MG 602 D ADP 604 D
50 1.35 1.51 128.8 -1.34 -0.46 19.0 86 10 9 10 10 1 3 0  MG 602 D ADP 604 D
51 1.33 1.65 157.3 -0.81 -0.29 15.2 84 10 11 11 14 4 1 0  MG 602 D ADP 604 D ADP 601 F
52 1.45 2.40 154.7 -1.82 -0.47 24.1 85 13 14 5 12 4 0 0  ADP 601 A MG 603 A
53 1.55 1.98 166.6 -1.03 -0.23 20.2 84 11 9 3 14 4 0 0  ADP 601 F ADP 603 F
54 1.30 1.99 167.9 -1.31 -0.30 18.8 81 13 15 11 18 8 0 0  ADP 601 A MG 603 A
55 1.29 1.43 49.6 -1.10 -0.23 25.7 77 5 5 1 9 0 0 0  
56 1.29 1.33 58.5 -2.00 -0.37 22.8 79 6 4 5 5 0 0 0  
57 1.16 1.21 73.4 -1.70 -0.48 19.7 80 5 6 6 9 0 0 0  
58 1.15 1.17 104.3 -1.83 -0.44 20.6 78 7 9 10 12 0 0 0  
59 1.28 1.34 105.6 -1.13 -0.30 20.4 77 5 8 4 11 0 0 0  
60 1.31 1.43 116.4 -1.17 -0.30 20.0 76 7 9 6 14 0 0 0  
61 1.15 1.17 134.7 -2.01 -0.43 23.1 78 9 8 11 14 0 0 0  
62 1.18 1.21 141.3 -1.04 -0.24 20.7 75 8 7 7 18 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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