PDBsum entry 8d5c Go to PDB code:  Pore analysis for: 8d5c calculated with MOLE 2.0 PDB id 8d5c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.09 3.37 27.7 1.16 0.55 8.8 79 2 1 2 7 2 0 0   2 2.62 2.85 28.1 -2.63 -0.54 34.1 84 4 3 1 1 0 0 0   3 1.29 1.48 34.3 -1.05 -0.28 10.9 83 1 2 4 2 3 0 0   4 2.73 2.77 44.3 -1.87 -0.42 27.6 88 6 4 5 6 0 0 0   5 1.46 1.63 46.7 -1.82 -0.41 18.0 80 4 5 3 2 4 0 0   6 1.25 1.54 77.3 -0.29 0.12 17.0 74 5 3 0 10 5 1 0   7 1.38 1.76 80.3 -0.13 -0.17 10.3 79 2 4 4 8 3 1 1   8 1.66 1.85 114.0 -0.91 -0.30 15.2 82 4 7 7 6 3 1 1   9 1.34 2.19 122.0 -0.80 -0.37 12.1 82 6 5 9 8 4 2 2   10 1.32 2.17 145.6 -0.32 -0.16 10.9 83 8 6 11 15 5 2 2   11 1.34 1.53 164.9 -1.84 -0.43 23.7 85 12 11 10 7 3 0 0   12 1.36 1.82 164.2 -1.85 -0.45 24.2 84 10 6 8 10 1 0 0   13 1.63 1.62 166.9 -1.14 -0.35 18.3 84 11 5 5 9 3 0 0   14 1.29 1.59 244.5 -1.23 -0.45 15.4 85 13 9 14 13 4 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.