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PDBsum entry 8cxy

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8cxy calculated with MOLE 2.0 PDB id
8cxy
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.49 5.41 48.9 -0.69 -0.24 22.8 75 5 8 0 4 2 0 0  EDO 606 B DT 2 D DC 3 D DA 4 F EDO 102 F
2 1.74 1.74 57.6 -1.99 -0.48 27.6 77 7 7 3 3 3 0 0  
3 1.20 1.44 59.7 -1.19 -0.45 24.4 73 6 5 1 5 2 0 0  EDO 603 A DC 3 D DA 4 D DG 5 E DA 6 E DC 7 E
4 3.34 3.78 61.4 -0.68 -0.23 18.2 78 4 8 3 5 3 0 0  EDO 606 B DT 2 D DC 3 D DA 4 F EDO 102 F
5 2.33 3.31 117.4 -1.37 -0.38 18.6 81 5 4 5 1 2 0 1  DT 10 H DC 11 H DC 12 H DT 2 I DG 4 I DG 5 I
6 1.96 2.10 212.9 -1.67 -0.56 19.8 80 17 11 9 3 3 0 1  DG 9 F DT 10 F DC 11 F DC 12 F DC 13 F DT 2 G DG
3 G DG 4 G DG 5 G DA 6 G DC 7 G DT 8 G DT 9 G DT
10 G DT 11 G DT 12 G DG 13 G DA 14 G EDO 901 G DT
2 H DC 3 H
7 1.22 1.37 139.9 -0.37 -0.03 12.3 80 3 5 4 7 5 1 1  Q8R 603 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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