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PDBsum entry 8cxx

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8cxx calculated with MOLE 2.0 PDB id
8cxx
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.75 1.95 26.5 0.53 0.43 14.9 69 2 3 0 3 5 0 0  EDO 605 A DC 3 D DA 4 D DT 1 F
2 1.54 1.61 29.8 -0.05 -0.05 7.2 80 1 2 2 4 1 1 1  T9I 1009 B DT 1 F DT 11 G DT 12 G DG 13 G DA 14 G
3 1.90 1.90 30.4 -1.90 -0.50 31.4 75 4 5 0 1 0 0 0  DA 14 G
4 3.83 3.83 41.2 -1.19 -0.53 22.8 75 5 6 0 2 1 0 0  EDO 1006 B DT 2 D DC 3 D DT 1 F DT 2 F DC 3 F DA
4 F EDO 101 F
5 1.92 1.89 43.3 -0.60 -0.44 15.2 74 2 5 0 2 1 0 0  EDO 1006 B DT 2 D DC 3 D DT 1 F DT 2 F DC 3 F DA
4 F EDO 101 F DA 14 G
6 1.56 1.60 45.0 -0.29 0.11 10.5 85 1 3 4 6 2 1 1  T9I 1009 B DT 1 F DG 3 G DT 11 G DT 12 G DG 13 G
DA 14 G
7 1.76 1.96 55.2 -0.74 -0.12 23.5 72 7 6 0 4 4 0 0  EDO 1006 B DT 2 D DA 4 F EDO 101 F
8 1.75 1.96 57.3 -0.34 -0.09 17.8 70 4 5 0 5 4 0 0  EDO 1006 B DT 2 D DA 4 F EDO 101 F DA 14 G
9 1.56 1.59 61.3 -1.07 -0.22 19.3 82 4 5 3 5 1 1 1  T9I 1009 B DT 1 F DT 11 G DT 12 G DG 13 G DA 14 G
10 1.47 1.48 97.2 -0.93 -0.50 10.4 82 4 0 2 3 2 0 0  EDO 607 A DA 6 D DA 7 D DA 8 D DG 9 D DT 10 D DC
11 D DC 12 D DG 5 E DA 6 E DC 7 E DT 8 E DT 9 E
11 1.49 1.62 105.9 -1.39 -0.50 14.8 84 7 1 3 3 1 0 0  EDO 607 A DA 8 D DG 9 D DT 10 D DC 11 D DG 5 E DA
6 E DC 7 E DT 11 E DT 12 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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