PDBsum entry 8cii Go to PDB code:  Tunnel analysis for: 8cii calculated with MOLE 2.0 PDB id 8cii Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 1.40 17.6 0.17 -0.15 5.4 67 1 0 2 2 2 1 0   2 1.16 2.47 31.6 0.29 -0.30 1.7 94 0 0 7 4 2 0 0   3 1.29 1.29 19.4 0.15 -0.13 7.2 86 2 2 3 4 1 0 0   4 1.26 2.35 32.1 0.44 -0.25 1.6 91 0 0 7 5 2 0 0   5 1.23 2.49 28.0 0.06 -0.12 5.4 93 2 0 4 3 2 0 0   6 1.23 2.50 30.9 0.25 -0.03 7.8 94 2 1 3 4 1 0 0   7 1.23 2.51 31.5 0.18 -0.35 4.1 99 1 0 3 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.