PDBsum entry 8cgi

Ribosome

PDB id: 8cgi

Contents

Protein chains

12 a.a.

206 a.a.

99 a.a.

127 a.a.

98 a.a.

115 a.a.

100 a.a.

84 a.a.

DNA/RNA

Ligands

P8F

Metals

_MG ×32

__K ×10

Waters ×948

PDB id:

8cgi

Name:

Ribosome

Title:

Pentacycline tp038 bound to the 30s head

Structure:

Large ribosomal subunit protein bl31a. Chain: 4. Synonym: 50s ribosomal protein l31. 16s rrna. Chain: a. Small ribosomal subunit protein us3. Chain: c. Synonym: 30s ribosomal protein s3. 30s ribosomal protein s7.

Source:

Escherichia coli bw25113. Organism_taxid: 679895. Organism_taxid: 679895

Authors:

H.Paternoga,C.Crowe-Mcauliffe,J.Novacek,D.N.Wilson

Key ref:

H.Paternoga et al. Structural conservation of antibiotic interaction wit ribosomes. To be published, . PubMed id: 37550453

Date:

04-Feb-23 Release date: 26-Jul-23

Protein chain

P0A7M9  (RL31_ECOLI) -  Large ribosomal subunit protein bL31 from Escherichia coli (strain K12)

Seq: 70 a.a.

Struc: 12 a.a.

Protein chain

P0A7V3  (RS3_ECOLI) -  Small ribosomal subunit protein uS3 from Escherichia coli (strain K12)

Seq: 233 a.a.

Struc: 206 a.a.

Protein chain

P02359  (RS7_ECOLI) -  Small ribosomal subunit protein uS7 from Escherichia coli (strain K12)

Seq: 179 a.a.

Struc: 99 a.a.*

Protein chain

P0A7X3  (RS9_ECOLI) -  Small ribosomal subunit protein uS9 from Escherichia coli (strain K12)

Seq: 130 a.a.

Struc: 127 a.a.

Protein chain

P0A7R5  (RS10_ECOLI) -  Small ribosomal subunit protein uS10 from Escherichia coli (strain K12)

Seq: 103 a.a.

Struc: 98 a.a.

Protein chain

P0A7S9  (RS13_ECOLI) -  Small ribosomal subunit protein uS13 from Escherichia coli (strain K12)

Seq: 118 a.a.

Struc: 115 a.a.

Protein chain

P0AG59  (RS14_ECOLI) -  Small ribosomal subunit protein uS14 from Escherichia coli (strain K12)

Seq: 101 a.a.

Struc: 100 a.a.

Protein chain

P0A7U3  (RS19_ECOLI) -  Small ribosomal subunit protein uS19 from Escherichia coli (strain K12)

Seq: 92 a.a.

Struc: 84 a.a.

* PDB and UniProt seqs differ at 2 residue positions (black crosses)

DNA/RNA chain

C-C-C-G-C-A-C-A-A-G-C-G-G-U-G-G-A-G-C-A-U-G-U-G-G-U-U-U-A-A-U-U-C-G-A-U-2MG-5M ... 460 bases

Enzyme reactions

• Enzyme class: Chains 4, C, G, I, J, M, N, S: E.C.?