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PDBsum entry 8a57
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protein dna_rna ligands metals Protein-protein interface(s) links
Ribosome PDB id
8a57

 

 

 

 

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Contents
Protein chains
58 a.a.
59 a.a.
56 a.a.
59 a.a.
53 a.a.
47 a.a.
42 a.a.
63 a.a.
36 a.a.
273 a.a.
206 a.a.
203 a.a.
175 a.a.
165 a.a.
142 a.a.
122 a.a.
144 a.a.
133 a.a.
122 a.a.
118 a.a.
112 a.a.
116 a.a.
101 a.a.
110 a.a.
90 a.a.
95 a.a.
73 a.a.
414 a.a.
140 a.a.
DNA/RNA
Ligands
SPD
PUT ×2
GNP
Metals
_ZN ×2
_MG ×160
__K
PDB id:
8a57
Name: Ribosome
Title: Cryo-em structure of hflxr bound to the listeria monocytogenes 50s ribosomal subunit.
Structure: 50s ribosomal protein l28. Chain: 1. 50s ribosomal protein l29. Chain: 2. 50s ribosomal protein l30. Chain: 3. 50s ribosomal protein l31 type b. Chain: 4. 50s ribosomal protein l32-2.
Source: Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: atcc baa-679 / egd-e. Strain: atcc baa-679 / egd-e
Authors: T.O.Koller,C.Crowe-Mcauliffe,D.N.Wilson
Key ref: T.O.Koller et al. (2022). Structural basis for hflxr-Mediated antibiotic resist listeria monocytogenes.. Nucleic acids res., 50, 11285. PubMed id: 36300626 DOI: 10.1093/NAR/GKAC934
Date:
14-Jun-22     Release date:   02-Nov-22    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P66144  (RL28_LISMO) -  Large ribosomal subunit protein bL28 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		62 a.a.
58 a.a.
Protein chain
Pfam   ArchSchema ?
P66166  (RL29_LISMO) -  Large ribosomal subunit protein uL29 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		63 a.a.
59 a.a.
Protein chain
Pfam   ArchSchema ?
Q927M5  (RL30_LISMO) -  Large ribosomal subunit protein uL30 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		59 a.a.
56 a.a.
Protein chain
Pfam   ArchSchema ?
P0A485  (RL31B_LISMO) -  Large ribosomal subunit protein bL31B from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		81 a.a.
59 a.a.
Protein chain
Pfam   ArchSchema ?
P66207  (RL322_LISMO) -  Large ribosomal subunit protein bL32B from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		57 a.a.
53 a.a.
Protein chain
Pfam   ArchSchema ?
P66219  (RL331_LISMO) -  Large ribosomal subunit protein bL33A from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		49 a.a.
47 a.a.
Protein chain
Pfam   ArchSchema ?
P66248  (RL34_LISMO) -  Large ribosomal subunit protein bL34 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		44 a.a.
42 a.a.
Protein chain
Pfam   ArchSchema ?
P0A491  (RL35_LISMO) -  Large ribosomal subunit protein bL35 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		66 a.a.
63 a.a.
Protein chain
Pfam   ArchSchema ?
P66290  (RL36_LISMO) -  Large ribosomal subunit protein bL36 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		37 a.a.
36 a.a.
Protein chain
Pfam   ArchSchema ?
P60426  (RL2_LISMO) -  Large ribosomal subunit protein uL2 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		277 a.a.
273 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y440  (RL3_LISMO) -  Large ribosomal subunit protein uL3 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		209 a.a.
206 a.a.
Protein chain
Pfam   ArchSchema ?
P61055  (RL4_LISMO) -  Large ribosomal subunit protein uL4 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		207 a.a.
203 a.a.
Protein chain
Pfam   ArchSchema ?
Q927L9  (RL5_LISMO) -  Large ribosomal subunit protein uL5 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		179 a.a.
175 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y444  (RL6_LISMO) -  Large ribosomal subunit protein uL6 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		178 a.a.
165 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y458  (RL13_LISMO) -  Large ribosomal subunit protein uL13 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		145 a.a.
142 a.a.
Protein chain
Pfam   ArchSchema ?
Q927L7  (RL14_LISMO) -  Large ribosomal subunit protein uL14 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		122 a.a.
122 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y447  (RL15_LISMO) -  Large ribosomal subunit protein uL15 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		146 a.a.
144 a.a.
Protein chain
Pfam   ArchSchema ?
Q927L4  (RL16_LISMO) -  Large ribosomal subunit protein uL16 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		144 a.a.
133 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y450  (RL17_LISMO) -  Large ribosomal subunit protein bL17 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		135 a.a.
122 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y445  (RL18_LISMO) -  Large ribosomal subunit protein uL18 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		119 a.a.
118 a.a.
Protein chain
Pfam   ArchSchema ?
O53083  (RL19_LISMO) -  Large ribosomal subunit protein bL19 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		114 a.a.
112 a.a.
Protein chain
Pfam   ArchSchema ?
P66103  (RL20_LISMO) -  Large ribosomal subunit protein bL20 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		119 a.a.
116 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y6Y9  (RL21_LISMO) -  Large ribosomal subunit protein bL21 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		102 a.a.
101 a.a.
Protein chain
Pfam   ArchSchema ?
Q927L2  (RL22_LISMO) -  Large ribosomal subunit protein uL22 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		118 a.a.
110 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y441  (RL23_LISMO) -  Large ribosomal subunit protein uL23 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		94 a.a.
90 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y443  (RL24_LISMO) -  Large ribosomal subunit protein uL24 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		103 a.a.
95 a.a.*
Protein chain
Pfam   ArchSchema ?
P66125  (RL27_LISMO) -  Large ribosomal subunit protein bL27 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		96 a.a.
73 a.a.
Protein chain
Pfam   ArchSchema ?
Q8Y8Y0  (Q8Y8Y0_LISMO) -  GTPase HflX from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		418 a.a.
414 a.a.
Protein chain
Pfam   ArchSchema ?
P66054  (RL11_LISMO) -  Large ribosomal subunit protein uL11 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc: 		141 a.a.
140 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

DNA/RNA chains
  U-U-A-A-G-U-U-A-G-A-A-A-G-G-G-C-G-C-A-C-G-G-U-G-G-A-U-G-C-C-U-U-G-G-C-A-C-U-A- ... 2908 bases
  C-U-G-G-U-A-G-U-U-A-U-G-G-C-G-A-G-A-A-G-G-U-C-A-C-A-C-C-C-G-U-U-C-C-C-A-U-A-C- 114 bases

 

 

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