spacer
spacer

PDBsum entry 7yu6

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 7yu6 calculated with MOLE 2.0 PDB id
7yu6
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 1.83 26.0 -1.35 -0.55 19.5 90 5 1 2 3 0 0 0  
2 3.77 4.27 26.8 -1.16 -0.14 23.0 82 5 4 2 0 2 0 0  
3 3.94 4.15 27.0 -1.02 -0.03 19.4 81 5 3 3 0 3 0 0  
4 2.53 2.70 28.1 -1.75 -0.36 27.4 84 6 3 2 2 1 0 0  
5 2.53 2.70 28.1 -0.93 -0.30 18.2 84 6 1 2 2 2 0 0  
6 2.53 2.70 28.4 -0.84 -0.17 15.7 83 6 0 3 2 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer