spacer
spacer

PDBsum entry 7xpy

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 7xpy calculated with MOLE 2.0 PDB id
7xpy
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.39 3.44 22.4 -0.14 0.16 11.0 72 1 2 2 6 1 0 0  
2 1.40 3.47 23.8 -0.44 0.14 17.6 71 3 2 1 6 1 0 0  
3 1.25 1.26 16.0 -0.05 -0.08 11.4 64 1 1 0 5 3 1 0  
4 1.24 1.24 18.2 -0.45 -0.10 16.2 71 3 2 2 4 3 1 0  
5 1.10 1.33 24.6 -0.90 -0.30 15.0 71 1 4 3 3 4 0 0  
6 1.22 1.55 26.4 1.29 0.41 7.2 64 1 0 1 7 3 0 0  
7 1.37 1.49 21.4 -1.76 -0.31 26.2 79 3 3 1 3 1 0 0  
8 1.24 1.24 19.4 -1.00 -0.25 9.8 77 2 0 2 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer