spacer
spacer

PDBsum entry 7xdn

Go to PDB code: 
Top Page protein ligands pores links
Pore analysis for: 7xdn calculated with MOLE 2.0 PDB id
7xdn
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.96 27.2 1.84 0.60 3.4 76 0 1 2 11 1 1 0  
2 1.30 4.63 31.5 3.55 1.13 0.2 70 0 0 0 18 1 1 0  
3 1.12 2.51 33.4 1.97 0.63 3.5 80 1 1 2 10 1 1 0  
4 1.28 4.57 35.5 3.02 0.92 0.6 73 0 0 1 19 0 2 0  
5 1.24 1.42 55.9 2.06 0.58 3.9 79 1 0 0 22 2 2 0  
6 1.24 1.41 58.8 2.03 0.61 3.8 80 1 0 1 24 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer