 |
PDBsum entry 7xdn
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 7xdn calculated with MOLE 2.0
|
PDB id
|
|
|
|
7xdn
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
6 pores,
coloured by radius |
 |
6 pores,
coloured by radius
|
6 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.32 |
1.96 |
27.2 |
1.84 |
0.60 |
3.4 |
76 |
 |
0 |
1 |
2 |
11 |
1 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.30 |
4.63 |
31.5 |
3.55 |
1.13 |
0.2 |
70 |
0 |
0 |
0 |
18 |
1 |
1 |
0 |
|
 |
3 |
 |
1.12 |
2.51 |
33.4 |
1.97 |
0.63 |
3.5 |
80 |
1 |
1 |
2 |
10 |
1 |
1 |
0 |
|
 |
4 |
 |
1.28 |
4.57 |
35.5 |
3.02 |
0.92 |
0.6 |
73 |
0 |
0 |
1 |
19 |
0 |
2 |
0 |
|
 |
5 |
 |
1.24 |
1.42 |
55.9 |
2.06 |
0.58 |
3.9 |
79 |
1 |
0 |
0 |
22 |
2 |
2 |
0 |
|
 |
6 |
 |
1.24 |
1.41 |
58.8 |
2.03 |
0.61 |
3.8 |
80 |
1 |
0 |
1 |
24 |
3 |
2 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |