PDBsum entry 7w41

Tunnel analysis for: 7w41 calculated with

MOLE 2.0

PDB id

7w41

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.24

3.76

23.7

-0.87

0.10

15.4

76

5

0

2

3

3

2

1

8B8 601 A

2

1.89

2.63

28.9

-1.00

0.22

11.5

72

5

1

2

2

3

4

1

8B8 601 A

3

1.37

2.96

29.9

-0.80

0.19

15.0

72

4

1

2

5

3

3

1

8B8 601 A

4

2.23

3.76

31.0

-1.45

-0.11

21.8

76

3

2

3

2

3

2

1

8B8 601 A

5

2.12

2.13

33.8

-0.93

0.25

14.7

73

3

0

2

4

4

3

1

8B8 601 A

6

1.25

1.37

35.1

-0.65

-0.02

13.6

77

3

0

3

6

2

2

1

8B8 601 A

7

1.73

2.08

37.5

-1.74

-0.03

26.1

75

5

3

2

3

4

2

1

8B8 601 A

8

1.37

2.36

42.7

-1.35

0.09

23.8

78

5

2

2

6

4

2

1

8B8 601 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.