PDBsum entry 7vdm Go to PDB code:  Pore analysis for: 7vdm calculated with MOLE 2.0 PDB id 7vdm Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.84 25.8 -0.86 -0.40 19.8 85 2 3 2 3 1 0 0   2 1.38 1.39 27.5 0.11 -0.18 5.0 82 1 1 2 4 3 0 0   3 1.84 3.23 109.8 -1.78 -0.34 18.0 83 9 2 7 3 4 0 0   4 1.71 3.20 45.1 -1.37 -0.39 17.7 84 5 3 4 2 1 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.